User contributions for Mick

11 September 2026

• 14:4314:43, 11 September 2026 diff hist +13,550‎ N Program 2027 ‎ Created page with " '''NOTE: THIS PAGE IS UNDER CONSTRUCTION WITH A NEW TEACHER IN 2026''' '''REMEMBER TO BRING A LAPTOP FOR EXERCISES''' Lectures will be in person in building [https://maps.app.goo.gl/wH5EW199wrChCmWK7 341] in auditorium 23. Lectures and exercises will take place on Discord (https://discord.gg/Qgw9M3SZA5). Please register with your full name. Will use Discord for online classes and collaboration with your project partners. Rather than emailing questions to the teac..." current
• 14:4214:42, 11 September 2026 diff hist +18‎ 22126 - Next Generation Sequencing Analysis ‎No edit summary current

17 January 2026

• 18:2018:20, 17 January 2026 diff hist −13‎ SNP calling exercise part 2 ‎No edit summary current

15 January 2026

• 16:3616:36, 15 January 2026 diff hist +7‎ Program 2026 ‎No edit summary current
• 16:3516:35, 15 January 2026 diff hist +1‎ Program 2026 ‎No edit summary
• 16:3516:35, 15 January 2026 diff hist +10‎ Program 2026 ‎No edit summary
• 16:3416:34, 15 January 2026 diff hist +88‎ Program 2026 ‎No edit summary

14 January 2026

• 14:2014:20, 14 January 2026 diff hist +16‎ Program 2026 ‎No edit summary

13 January 2026

• 18:5018:50, 13 January 2026 diff hist 0‎ Postprocess exercise ‎No edit summary current
• 18:5018:50, 13 January 2026 diff hist −40‎ Postprocess exercise ‎No edit summary

12 January 2026

• 17:4117:41, 12 January 2026 diff hist +34‎ Exercise ‎No edit summary current
• 11:1411:14, 12 January 2026 diff hist +46‎ Program 2026 ‎No edit summary
• 10:4410:44, 12 January 2026 diff hist +1,006‎ Program 2026 ‎No edit summary

11 January 2026

• 09:5009:50, 11 January 2026 diff hist +245‎ Exercise ‎No edit summary
• 09:4709:47, 11 January 2026 diff hist +67‎ Exercise ‎No edit summary
• 09:4309:43, 11 January 2026 diff hist +72‎ Exercise ‎No edit summary
• 09:3709:37, 11 January 2026 diff hist +5,373‎ N Solution ‎ Created page with "<hr> <h2>Answers</h2> <p><b>Marsupials Newick</b></p> <pre> myTree <- read.tree(text = "((Echidna,Platypus),(American_Opossums,(Monito_del_Monte,((((Koalas,Wombats),(Possums,(Kangaroos,Wallabies))),(((Bandicoots,Bilby),Marsupial_Mole),((Tasmanian_Devil,Tasmanian_Tiger),Numbats)))))));") </pre> <p><b>Q1.</b> The two trees contain the same information about relationships, but the rooted tree additionally contains information about the most recent common ancestor of..." current
• 09:3509:35, 11 January 2026 diff hist +11,557‎ Exercise ‎No edit summary

9 January 2026

• 21:0121:01, 9 January 2026 diff hist −1‎ Program 2026 ‎No edit summary
• 12:1812:18, 9 January 2026 diff hist −20‎ Ancient DNA exercise ‎No edit summary current
• 12:0712:07, 9 January 2026 diff hist +106‎ Ancient DNA exercise ‎No edit summary
• 10:4810:48, 9 January 2026 diff hist +94‎ Program 2026 ‎No edit summary
• 10:0910:09, 9 January 2026 diff hist −291‎ Exercise and answers ‎No edit summary current
• 10:0210:02, 9 January 2026 diff hist +1,918‎ Exercise and answers ‎No edit summary

8 January 2026

• 12:2612:26, 8 January 2026 diff hist +14‎ Denovo exercise ‎No edit summary current
• 12:2012:20, 8 January 2026 diff hist +69‎ Denovo exercise ‎No edit summary
• 11:2311:23, 8 January 2026 diff hist +198‎ Exercise and answers ‎No edit summary
• 11:1811:18, 8 January 2026 diff hist +735‎ Exercise and answers ‎No edit summary
• 11:1511:15, 8 January 2026 diff hist +830‎ Exercise and answers ‎No edit summary
• 11:1211:12, 8 January 2026 diff hist +59‎ Denovo exercise ‎No edit summary
• 10:5310:53, 8 January 2026 diff hist 0‎ Program 2026 ‎No edit summary
• 10:4110:41, 8 January 2026 diff hist +2‎ Program 2026 ‎No edit summary
• 10:3410:34, 8 January 2026 diff hist −4‎ Program 2026 ‎No edit summary

7 January 2026

• 16:5516:55, 7 January 2026 diff hist +337‎ SNP calling exercise answers part 1 ‎No edit summary current
• 15:2415:24, 7 January 2026 diff hist +263‎ SNP calling exercise answers part 2 ‎No edit summary current
• 13:4813:48, 7 January 2026 diff hist +29‎ Rnaseq exercise ‎No edit summary current
• 12:5912:59, 7 January 2026 diff hist +50‎ SNP calling exercise part 2 ‎No edit summary
• 12:1712:17, 7 January 2026 diff hist 0‎ Exercise and answers ‎No edit summary
• 12:1712:17, 7 January 2026 diff hist +39‎ Exercise and answers ‎No edit summary
• 12:1212:12, 7 January 2026 diff hist +12,133‎ N Exercise and answers ‎ Created page with "<h2>Overview</h2> <p> In this mini-workshop you will familiarize yourself with <b>TADbit</b> (Serra et al., 2017): from FASTQ files to contact matrix and beyond. </p> <p> <b>A Primer into 3D Genomics: A Mini-Workshop</b><br> Juan Antonio Rodríguez, Globe Institute, University of Copenhagen<br> 9 January 2026, DTU </p> <hr> <h2>Outline of the exercises</h2> <ol> <li>Preprocess Hi-C FASTQ data</li> <li>Index reference genome</li> <li>Use TADbit to: <ol>..."
• 12:0012:00, 7 January 2026 diff hist +54‎ SNP calling exercise part 1 ‎No edit summary current
• 11:4711:47, 7 January 2026 diff hist +3,750‎ Alignment exercise ‎No edit summary current Tag: Manual revert
• 11:2911:29, 7 January 2026 diff hist −24‎ Alignment exercise ‎No edit summary
• 11:2211:22, 7 January 2026 diff hist +7,320‎ Alignment exercise ‎No edit summary
• 11:1811:18, 7 January 2026 diff hist +5‎ Alignment exercise ‎No edit summary
• 11:1311:13, 7 January 2026 diff hist +52‎ Postprocess exercise ‎No edit summary
• 11:1111:11, 7 January 2026 diff hist +25‎ SNP calling exercise part 1 ‎No edit summary

6 January 2026

• 16:5316:53, 6 January 2026 diff hist −11,051‎ Alignment exercise ‎No edit summary
• 16:3616:36, 6 January 2026 diff hist −94‎ Program 2026 ‎No edit summary
• 15:4315:43, 6 January 2026 diff hist −110‎ Denovo exercise ‎No edit summary