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__NOTOC__ | __NOTOC__ | ||
Last updated: September | Last updated: September 5, 2025<br> | ||
Warning: This is not complete or correct yet. | Warning: This is not complete or correct yet. | ||
== Files used in various exercises == | == Files used in various exercises == | ||
| Line 17: | Line 17: | ||
[https://teaching.healthtech.dtu.dk/material/22116/mixedlines.txt mixedlines.txt]<br> | [https://teaching.healthtech.dtu.dk/material/22116/mixedlines.txt mixedlines.txt]<br> | ||
[https://teaching.healthtech.dtu.dk/material/22116/ex5.acc ex5.acc]<br> | [https://teaching.healthtech.dtu.dk/material/22116/ex5.acc ex5.acc]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/numbers1.txt numbers1.txt]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/numbers2.txt numbers2.txt]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/numbers3.txt numbers3.txt]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/badnumbers.txt badnumbers.txt]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/goodnumbers.txt goodnumbers.txt]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/secret.txt secret.txt]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/secret2.txt secret2.txt]<br> | ||
[https://teaching.healthtech.dtu.dk/material/22116/dna.dat dna.dat]<br> | [https://teaching.healthtech.dtu.dk/material/22116/dna.dat dna.dat]<br> | ||
[https://teaching.healthtech.dtu.dk/material/22116/dna.fsa dna.fsa]<br> | [https://teaching.healthtech.dtu.dk/material/22116/dna.fsa dna.fsa]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/orphans.sp orphans.sp]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/studentweight.txt studentweight.txt]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/sprot1.dat sprot1.dat]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/sprot2.dat sprot2.dat]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/sprot3.dat sprot3.dat]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/sprot4.dat sprot4.dat]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/sprotall.dat sprotall.dat]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/sorted5.acc sorted5.acc]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/clean5.acc clean5.acc]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/ex1corrupt.dat ex1corrupt.dat]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/dna7.fsa dna7.fsa]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/revdna7.fsa revdna7.fsa]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/dna7GC.fsa dna7GC.fsa]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/data1.gb data1.gb]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/data2.gb data2.gb]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/data3.gb data3.gb]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/data4.gb data4.gb]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/start10.dat start10.dat]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/res10.dat res10.dat]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/aa7.fsa aa7.fsa]<br> | ||
[https://teaching.healthtech.dtu.dk/material/ | [https://teaching.healthtech.dtu.dk/material/22116/uniq5.acc uniq5.acc]<br> | ||
[https://teaching.healthtech.dtu.dk/material/22116/order5.acc order5.acc]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/res10.dat res10.dat]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/slinger.txt slinger.txt]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/hoist.txt hoist.txt]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/combined.txt combined.txt]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/geneA.txt geneA.txt]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/geneB.txt geneB.txt]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/geneC.txt geneC.txt]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/geneD.txt geneD.txt]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/geneE.txt geneE.txt]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/gene_combined.txt gene_combined.txt]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/dnanoise.fsa dnanoise.fsa]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/fastaout.fsa fastaout.fsa]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/alignment.fsa alignment.fsa]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/HIVenvelope.txt HIVenvelope.txt]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/HIVenv.fsa HIVenv.fsa]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/HIVepitopes.txt HIVepitopes.txt]<br> | |||
[https://teaching.healthtech.dtu.dk/material/22116/HIVepitopesML.txt HIVepitopesML.txt]<br> | |||
During the course, you will be creating the following files: | During the course, you will be creating the following files which values depends on your choices: sums.fsa selected.fsa rest.fsa | ||
Latest revision as of 21:18, 6 September 2025
Last updated: September 5, 2025
Warning: This is not complete or correct yet.
Files used in various exercises
To download the files to your system, just press the Shift key while you left click on the blue link. Follow the instructions.
You can play around with these files as much as you like. If you change or destroy them, just download them again.
Put the files in your course folder on your computer.
Individual files
ex1.acc
ex1.dat
ex1_1.dat
ex1_2.dat
ex1_3.dat
mixedlines.txt
ex5.acc
numbers1.txt
numbers2.txt
numbers3.txt
badnumbers.txt
goodnumbers.txt
secret.txt
secret2.txt
dna.dat
dna.fsa
orphans.sp
studentweight.txt
sprot1.dat
sprot2.dat
sprot3.dat
sprot4.dat
sprotall.dat
sorted5.acc
clean5.acc
ex1corrupt.dat
dna7.fsa
revdna7.fsa
dna7GC.fsa
data1.gb
data2.gb
data3.gb
data4.gb
start10.dat
res10.dat
aa7.fsa
uniq5.acc
order5.acc
res10.dat
slinger.txt
hoist.txt
combined.txt
geneA.txt
geneB.txt
geneC.txt
geneD.txt
geneE.txt
gene_combined.txt
dnanoise.fsa
fastaout.fsa
alignment.fsa
HIVenvelope.txt
HIVenv.fsa
HIVepitopes.txt
HIVepitopesML.txt
During the course, you will be creating the following files which values depends on your choices: sums.fsa selected.fsa rest.fsa