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15 March 2024
- 10:4010:40, 15 March 2024 diff hist 0 N File:Q8 EUK.png No edit summary current
- 10:4010:40, 15 March 2024 diff hist 0 N File:Q7 yeast 40-50 zoom freq.png No edit summary current
- 10:3910:39, 15 March 2024 diff hist 0 N File:Q7 yeast 40-50 zoom2.png No edit summary current
- 10:3910:39, 15 March 2024 diff hist 0 N File:Q7 yeast 40-50 zoom1.png No edit summary current
- 10:3910:39, 15 March 2024 diff hist 0 N File:Q7 yeast 25-75.png No edit summary current
- 10:3810:38, 15 March 2024 diff hist 0 N File:Q6 ecoli logo.png No edit summary current
- 10:3810:38, 15 March 2024 diff hist 0 N File:Q5 ecoli logo.png No edit summary current
- 10:3710:37, 15 March 2024 diff hist 0 N File:Q4 spombe acceptor.png No edit summary current
- 10:3710:37, 15 March 2024 diff hist 0 N File:Q4 scer acceptor.png No edit summary current
- 10:3610:36, 15 March 2024 diff hist 0 N File:Q4 Athal acceptor.png No edit summary current
- 10:3610:36, 15 March 2024 diff hist 0 N File:Q4 dmel acceptor.png No edit summary current
- 10:3610:36, 15 March 2024 diff hist 0 N File:Q4 hs acceptor.png No edit summary current
- 10:3510:35, 15 March 2024 diff hist 0 N File:Q4 spombe.png No edit summary current
- 10:3510:35, 15 March 2024 diff hist 0 N File:Q4 scer donor.png No edit summary current
- 10:3410:34, 15 March 2024 diff hist 0 N File:Q4 Athal donor.png No edit summary current
- 10:3410:34, 15 March 2024 diff hist 0 N File:Q4 dmel donor.png No edit summary current
- 10:3410:34, 15 March 2024 diff hist 0 N File:Q4 hs donor.png No edit summary current
- 10:3210:32, 15 March 2024 diff hist 0 N File:Q3 logo.png No edit summary current
- 10:3210:32, 15 March 2024 diff hist 0 N File:Q2 logo.png No edit summary current
- 10:3110:31, 15 March 2024 diff hist 0 N File:Q1 logo.png No edit summary current
- 10:3110:31, 15 March 2024 diff hist +5,674 N ExSeqLogosAnswers Created page with "Answers to the Sequence logo exercise '''Written by:''' [http://www.dtu.dk/service/telefonbog/person?id=18103&cpid=214039&tab=2&qt=dtupublicationquery Rasmus Wernersson], April 2015 (latest update: April 2018) = Q1 = Image:Q1_logo.png * The "GT" consensus site is clearly seen (completely conserved: 2 bits of information), and it appears that there is also some signal on the exon side (preference for "G" on the position before) and on the intron side..." current
- 10:3010:30, 15 March 2024 diff hist +1 ExSeqLogos →Seq2Logo (CBS/DTU) current
- 10:2910:29, 15 March 2024 diff hist +2 ExSeqLogos →Signal peptides
- 10:2910:29, 15 March 2024 diff hist 0 ExSeqLogos →Signal peptides
- 10:2810:28, 15 March 2024 diff hist 0 ExSeqLogos →Kozak sequence
- 10:2810:28, 15 March 2024 diff hist 0 ExSeqLogos →Shine-Dalgarno sequence
- 10:2710:27, 15 March 2024 diff hist 0 ExSeqLogos →Research task: cross-species comparison
- 10:2710:27, 15 March 2024 diff hist 0 N File:Document-save.png No edit summary current
- 10:2610:26, 15 March 2024 diff hist 0 N File:CBS logo.gif No edit summary current
- 10:2510:25, 15 March 2024 diff hist 0 N File:Weblogologo.png No edit summary current
- 10:2410:24, 15 March 2024 diff hist +15,550 N ExSeqLogos Created page with "'''Exercise written by:''' [http://www.dtu.dk/service/telefonbog/person?id=18103&cpid=214039&tab=2&qt=dtupublicationquery Rasmus Wernersson] (last update: March 2017) = Introduction = In this exercise we will introduce two methods for generating '''sequences logos''', and we will investigate, how we can extract and compare sequences information from '''large sets of sequences'''. == WebLogo (Berkeley) == right '''Link:''' http://weblogo.berkele..."
- 10:2410:24, 15 March 2024 diff hist +42 m 22111:Course plan autumn 2023 →Tuesday Oct 24 — Sequence information & logo-plots
- 10:2110:21, 15 March 2024 diff hist 0 N File:Epitopes PyMol figure.pptx.png No edit summary current
- 10:2010:20, 15 March 2024 diff hist 0 N File:Common Taxonomy Tree.png No edit summary current
- 10:2010:20, 15 March 2024 diff hist +12,317 N Answers:Malaria Vaccine Created page with "'''Answers to case study exercise about malaria vaccines''' (NB: numbers etc. found in the databases 11-10-2023): == 1 - What exactly is malaria? == '''1a)''' If you search for "malaria" on NCBIs Taxonomy page, you find some mosquitoes and some protozoans with the Genus name ''Plasmodium''. Clicking the name of one of these (twice) gets you to a page where you can see the ''lineage'': * Genus: ''Plasmodium'' * Phylum: ''Apicomplexa'' * (Super)Kingdom: ''Eukaryota''..."
- 10:1910:19, 15 March 2024 diff hist −2 Exercise:Malaria Vaccine →Epitope prediction
- 10:1810:18, 15 March 2024 diff hist 0 N File:Bepipred results partial ss.png No edit summary current
- 10:1810:18, 15 March 2024 diff hist 0 N File:PfEMP1 transport.jpg No edit summary current
- 10:1710:17, 15 March 2024 diff hist 0 N File:Nm0206-170-F1.jpg No edit summary current
- 10:1610:16, 15 March 2024 diff hist +26,869 N Exercise:Malaria Vaccine Created page with "Exercise written by: Thomas Salhøj Rask and [http://www.dtu.dk/service/telefonbog/person?id=25617&cpid=214126&tab=2&qt=dtupublicationquery Henrik Nielsen] — translated, revised and updated to BepiPred 2.0 by [http://www.dtu.dk/service/telefonbog/person?id=18103&cpid=214039&tab=2&qt=dtupublicationquery Rasmus Wernersson] and Henrik Nielsen. The purpose of this exercise is to apply the methods and knowledge you have learned so far on a real biological problem: Taking s..."
- 10:1510:15, 15 March 2024 diff hist 0 PyMOL →PyMOL current
- 10:1510:15, 15 March 2024 diff hist +12,023 N PyMOL Created page with "=PyMOL= [https://teaching.healthtech.dtu.dk/material/36611/PDF/PymolRef.pdf PyMOL quick reference card] <!-- ==Installation== Before you start, you need to install PyMOL. There are three versions available: for Mac OS X, Windows and Linux. Simply click the link to download the relevant version. * [http://www.cbs.dtu.dk/~blicher/Courses/MacPyMOL-v1.3r1-edu.tar.bz2 PyMOL for Mac] * [http://www.cbs.dtu.dk/~blicher/Courses/pymol-v1.3r1-edu-Linux-x86-TclTk8.5.tar.bz2 PyMO..."
- 10:1310:13, 15 March 2024 diff hist 0 N File:Struc alig 1k7c 1wab.jpeg No edit summary current
- 10:1210:12, 15 March 2024 diff hist 0 N File:1k7c 1wab pymol.png No edit summary current
- 10:1210:12, 15 March 2024 diff hist 0 N File:1k7c.png No edit summary current
- 10:1110:11, 15 March 2024 diff hist +6,261 N Protein Structure and Visualization Answers Created page with "=Protein Structure and Visualization - Answers= '''Written by:''' Anne Mølgaard, Thomas Blicher, Rasmus Wernersson (wiki version) == Q1 Rhamnogalacturonan acetylesterase in UniProt == *a) The signal peptide is from residue number 1 to 17. *b) The mature protein is from residue number 18 to 250, which means that the protein consists of 233 residues. *c) The active site is made up of three residues. The first is '''Ser26''', the two others are '''Asp209''' and '''His212'..."
- 10:1010:10, 15 March 2024 diff hist 0 N File:RGAE active site.png No edit summary current
- 10:0910:09, 15 March 2024 diff hist 0 N File:1K7C page.png No edit summary current
- 10:0910:09, 15 March 2024 diff hist 0 N File:PDB homepage.png No edit summary current
- 10:0810:08, 15 March 2024 diff hist +16,749 N Protein Structure and Visualization Created page with "''By Anne Mølgaard and Thomas Holberg Blicher with some updates/editing by Rasmus Wernersson'' == Overview == In this practical you will learn how to * Search the Protein Structure Databank for information. * Critically choose the best structure, when more than one is available. * Visualize a protein structure and highlight features of interest. You will work with the protein Rhamnogalacturonan acetylesterase (RGAE) from the fungus ''Aspergillus aculeatus''. It is one..."
