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• 17:32, 9 October 2025 Carol talk contribs created page File:Question7c.png
• 17:32, 9 October 2025 Carol talk contribs uploaded File:Question7c.png
• 17:32, 9 October 2025 Carol talk contribs created page File:Question7b.png
• 17:32, 9 October 2025 Carol talk contribs uploaded File:Question7b.png
• 17:31, 9 October 2025 Carol talk contribs created page File:Question7a.png
• 17:31, 9 October 2025 Carol talk contribs uploaded File:Question7a.png
• 17:31, 9 October 2025 Carol talk contribs created page File:Question4c.png
• 17:31, 9 October 2025 Carol talk contribs uploaded File:Question4c.png
• 17:31, 9 October 2025 Carol talk contribs created page File:Question4b.png
• 17:31, 9 October 2025 Carol talk contribs uploaded File:Question4b.png
• 17:31, 9 October 2025 Carol talk contribs created page File:Question4a.png
• 17:31, 9 October 2025 Carol talk contribs uploaded File:Question4a.png
• 17:30, 9 October 2025 Carol talk contribs created page File:Question3.png
• 17:30, 9 October 2025 Carol talk contribs uploaded File:Question3.png
• 17:30, 9 October 2025 Carol talk contribs created page File:Question2.png
• 17:30, 9 October 2025 Carol talk contribs uploaded File:Question2.png
• 17:20, 9 October 2025 Carol talk contribs created page Protein Structure answers37 (Created page with "=Protein Structure - Answers= == '''Question 1.''' Look at the method X-RAY diffraction (Å). Which of the complexes is of better quality and why? == The PDB complex 7SBD, has the best resolution (lower Å). == Question 2. Provide a screenshot of the complex == <!-- == Q2 Are all hits are relevant if you are looking for a representative structure of the protein you entered? == No, some of the results (the last four) are not Rhamnogalacturonan acetylesterase at a...")
• 14:24, 7 October 2025 Carol talk contribs created page File:PyMOL tutorial.pdf
• 14:24, 7 October 2025 Carol talk contribs uploaded File:PyMOL tutorial.pdf
• 22:33, 6 October 2025 Carol talk contribs created page File:PyMOL show SEQ.png
• 22:33, 6 October 2025 Carol talk contribs uploaded File:PyMOL show SEQ.png
• 22:11, 6 October 2025 Carol talk contribs created page File:PyMOL panels.png
• 22:11, 6 October 2025 Carol talk contribs uploaded File:PyMOL panels.png
• 21:53, 6 October 2025 Carol talk contribs created page File:PDB.png
• 21:53, 6 October 2025 Carol talk contribs uploaded File:PDB.png
• 21:49, 6 October 2025 Carol talk contribs created page File:Allergen-response.jpg
• 21:49, 6 October 2025 Carol talk contribs uploaded File:Allergen-response.jpg
• 19:33, 6 October 2025 Carol talk contribs created page Protein Structure (Created page with "''By Carolina Barra Quaglia'' == Overview == In this exercise you will learn how to * Search diferent protein databases to obtain protein structures. * Critically choose the best structure, when more than one is available. * Visualize a protein structure using PyMOL * Highlight features of interest and perform a basic alignment. This exercise is written a bit different. Instead of the step wise exercise we are going to try a different method called inquiry-based learni...")
• 21:24, 21 October 2024 Carol talk contribs created page File:BepiPred-2 onIEDB.png
• 21:24, 21 October 2024 Carol talk contribs uploaded File:BepiPred-2 onIEDB.png
• 20:39, 30 September 2024 Carol talk contribs created page ExBlast-Answers3 (Created page with "Answers to the BLAST exercise, by Henrik Nielsen. Values for database sizes etc. retrieved March 7, 2020 ==Part 1: Your first BLAST search== ===QUESTION 1.1=== * ''what is the identifier (Accession)?'' :OL351605 or M57671 (Note that the latter was also part of the sequence name for your query sequence!) * ''what is the alignment score ("Max score in bits")?'' :The max score is 780 bits (Raw score is 864) * ''what is the percent identity and query coverage?'' :100% * '...")
• 21:54, 21 September 2024 Carol talk contribs created page Exercise: BLAST3 (Created page with "Exercise written by Rasmus Wernersson and modified by Henrik Nielsen and Carolina Barra. ==Introduction== In this exercise, we will be using BLAST ('''B'''asic '''L'''ocal '''A'''lignment '''S'''earch '''T'''ool) for searching homologous sequences to our query on databases such as GenBank (DNA data) and UniProt (protein). When using BLAST it is of utmost importance to be able to critically evaluate the statistical significance of the results returned. The BLAST softwa...")