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Combined display of all available logs of 22111. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).
- 19:52, 19 April 2026 Carol talk contribs created page Exercise:Unknown variant (Created page with " What happens when you don't find your variant of interest? As an example, we are going to work with a variant in glucagon-like peptide-1 receptor to assess whether patients bearing that mutation can respond to Ozempic ==Introduction== In this exercise, you will: Identify a mutation in a patient GLP1R sequence Determine its effect at the protein level Evaluate whether the mutation affects drug response (Ozempic) ===Tools you will use=== NCBI Nucleotide and GeneBank...")
- 23:00, 26 November 2025 Henni talk contribs created page File:Ribosomal proteins 35-NJ tree.rerooted+annotated.png
- 23:00, 26 November 2025 Henni talk contribs uploaded File:Ribosomal proteins 35-NJ tree.rerooted+annotated.png
- 22:57, 26 November 2025 Henni talk contribs created page File:Ribosomal proteins 35-NJ tree.rerooted.png
- 22:57, 26 November 2025 Henni talk contribs uploaded File:Ribosomal proteins 35-NJ tree.rerooted.png
- 22:44, 26 November 2025 Henni talk contribs created page File:Ribosomal proteins 35-NJ tree.unrooted.newick.txt
- 22:44, 26 November 2025 Henni talk contribs uploaded File:Ribosomal proteins 35-NJ tree.unrooted.newick.txt
- 22:43, 26 November 2025 Henni talk contribs created page File:Ribosomal proteins 35-NJ tree.unrooted.png
- 22:43, 26 November 2025 Henni talk contribs uploaded File:Ribosomal proteins 35-NJ tree.unrooted.png
- 14:01, 6 November 2025 Carol talk contribs created page File:GraphicSummary PSSM onPDB.png
- 14:01, 6 November 2025 Carol talk contribs uploaded File:GraphicSummary PSSM onPDB.png
- 14:01, 6 November 2025 Carol talk contribs created page File:PSSM-2 on PDB.png
- 14:01, 6 November 2025 Carol talk contribs uploaded File:PSSM-2 on PDB.png
- 13:06, 6 November 2025 Carol talk contribs created page File:Results PSI-BLAST iteration2.png
- 13:06, 6 November 2025 Carol talk contribs uploaded File:Results PSI-BLAST iteration2.png
- 12:45, 6 November 2025 Carol talk contribs created page File:GraphicSummary PB3.png
- 12:45, 6 November 2025 Carol talk contribs uploaded File:GraphicSummary PB3.png
- 12:45, 6 November 2025 Carol talk contribs created page File:Results PSI-BLAST iteration3.png
- 12:45, 6 November 2025 Carol talk contribs uploaded File:Results PSI-BLAST iteration3.png
- 11:53, 6 November 2025 Carol talk contribs created page File:GraphicSummary PB2.png
- 11:53, 6 November 2025 Carol talk contribs uploaded File:GraphicSummary PB2.png
- 11:19, 6 November 2025 Carol talk contribs created page File:Question2 answer.png
- 11:19, 6 November 2025 Carol talk contribs uploaded File:Question2 answer.png
- 10:28, 6 November 2025 Carol talk contribs created page Exercise PSI-BLAST ans (Created page with "NEW answers are being updated! == When BLAST fails == * '''QUESTION 1''': How many significant hits does BLAST find (E-value < 0.005)? Answer: No sequences with E-value below 0.005. ==Trying another approach== * '''QUESTION 2''': How many significant hits does BLAST find (E-value < 0.005)? Answer: After the first iteration, 494 hits are found. * '''QUESTION 3''': How large a fraction of the query sequence do the significant hits match (excluding the identical match)...")
- 17:49, 5 November 2025 Carol talk contribs created page File:PSI-BLAST firstrun.png
- 17:49, 5 November 2025 Carol talk contribs uploaded File:PSI-BLAST firstrun.png
- 14:17, 5 November 2025 Carol talk contribs created page Exercise PSI-BLAST (Created page with "Written by: Carolina Barra Quaglia ==Overview== In this exercise you will learn how to * Critically assess when BLAST fails (e.g., no significant hits) and explore alternative strategies. * Use PSI-BLAST to search for remote homologues of a given protein sequence (an orphan gene). * Interpret iterative PSI-BLAST output (number of hits, coverage, E-value, identity/positives) to assess significance. * Save and reuse a PSSM (profile) to search specialized databases (e.g.,...")
- 13:49, 5 November 2025 Carol talk contribs created page File:C22orf45.txt
- 13:49, 5 November 2025 Carol talk contribs uploaded File:C22orf45.txt
- 16:35, 27 October 2025 Carol talk contribs created page File:Epitopes Malaria exercise.png
- 16:35, 27 October 2025 Carol talk contribs uploaded File:Epitopes Malaria exercise.png
- 13:16, 27 October 2025 Carol talk contribs created page File:BepiPred2.png
- 13:16, 27 October 2025 Carol talk contribs uploaded File:BepiPred2.png
- 17:32, 9 October 2025 Carol talk contribs created page File:Question7c.png
- 17:32, 9 October 2025 Carol talk contribs uploaded File:Question7c.png
- 17:32, 9 October 2025 Carol talk contribs created page File:Question7b.png
- 17:32, 9 October 2025 Carol talk contribs uploaded File:Question7b.png
- 17:31, 9 October 2025 Carol talk contribs created page File:Question7a.png
- 17:31, 9 October 2025 Carol talk contribs uploaded File:Question7a.png
- 17:31, 9 October 2025 Carol talk contribs created page File:Question4c.png
- 17:31, 9 October 2025 Carol talk contribs uploaded File:Question4c.png
- 17:31, 9 October 2025 Carol talk contribs created page File:Question4b.png
- 17:31, 9 October 2025 Carol talk contribs uploaded File:Question4b.png
- 17:31, 9 October 2025 Carol talk contribs created page File:Question4a.png
- 17:31, 9 October 2025 Carol talk contribs uploaded File:Question4a.png
- 17:30, 9 October 2025 Carol talk contribs created page File:Question3.png
- 17:30, 9 October 2025 Carol talk contribs uploaded File:Question3.png
- 17:30, 9 October 2025 Carol talk contribs created page File:Question2.png
- 17:30, 9 October 2025 Carol talk contribs uploaded File:Question2.png
- 17:20, 9 October 2025 Carol talk contribs created page Protein Structure answers37 (Created page with "=Protein Structure - Answers= == '''Question 1.''' Look at the method X-RAY diffraction (Å). Which of the complexes is of better quality and why? == The PDB complex 7SBD, has the best resolution (lower Å). == Question 2. Provide a screenshot of the complex == <!-- == Q2 Are all hits are relevant if you are looking for a representative structure of the protein you entered? == No, some of the results (the last four) are not Rhamnogalacturonan acetylesterase at a...")
