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• 12:25, 24 October 2025 Carol talk contribs created page Bcell Epitope prediction (Created page with "We want to look for epitopes on the HIV GP120 protein. We will use both sequence-based and structure-based methods. Input data. Go to the pdb homepage and look for the pdb entry 4LSP. It is GP120 complexed with a broadly neutralizing antibody. These antibodies are extremely powerful, since they are effective against many different strains. Q1: Download both the structure (pdb) and the sequence (fasta) of the proteins in this entry. Which proteins are in chain G, L and...")