User contributions for Carol

For Carol talk block log uploads logs

A user with 280 edits. Account created on 23 August 2024.

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11:5811:58, 28 October 2026 diff hist −1‎ Bcell Epitope prediction ans ‎ →‎Q3. Which residues form the epitopes? Are they linear? Do they have a linear core? current
11:5611:56, 28 October 2026 diff hist −477‎ Bcell Epitope prediction ans ‎ →‎Q2. Show the epitopes, count residues, and describe secondary structure
11:5311:53, 28 October 2026 diff hist −261‎ Bcell Epitope prediction ans ‎ →‎Q1. List chain IDs for antigen versus antibody in each complex
11:5211:52, 28 October 2026 diff hist −80‎ Bcell Epitope prediction ans ‎ →‎Q2. Show the epitopes, count residues, and describe secondary structure
11:5111:51, 28 October 2026 diff hist −44‎ Bcell Epitope prediction ans ‎ →‎Q2. Show the epitopes, count residues, and describe secondary structure
11:5011:50, 28 October 2026 diff hist −422‎ Bcell Epitope prediction ans ‎ →‎B-cell epitope prediction — Instructor answer key
11:4811:48, 28 October 2026 diff hist +19,723‎ N Bcell Epitope prediction ans ‎ Created page with "<!-- INSTRUCTOR ANSWER KEY — DTU 22145 Matches the CURRENT exercise page checked 28 October 2026 (Q1–Q10; Parts A–D). Derived from uploaded experimental 4FQI.cif and 7K39.cif; supplied BepiPred-2, BepiPred-3, DiscoTope-2 and DiscoTope-3 files for 7K39; and AlphaFold 3 prediction archives for 4FQI and 7K39. This file is intended for an instructor page; it reveals the answers. The prediction performance below is for 7K39 H3N2 only, unless stated. Do not interpret res..."
10:5610:56, 28 October 2026 diff hist +229‎ Bcell Epitope prediction ‎No edit summary current
10:5210:52, 28 October 2026 diff hist +33‎ Bcell Epitope prediction ‎No edit summary
10:5010:50, 28 October 2026 diff hist +230‎ Bcell Epitope prediction ‎No edit summary
09:5809:58, 28 October 2026 diff hist +1‎ 22145 Immunological Bioinformatics Course Programme Fall 2026 ‎ →‎Wednesday, 2 September 2026 — Introduction and databases
09:5809:58, 28 October 2026 diff hist +1‎ 22145 Immunological Bioinformatics Course Programme Fall 2026 ‎ →‎Wednesday, 21 October 2026 — BCR and TCR structure prediction
09:5709:57, 28 October 2026 diff hist 0‎ 22145 Immunological Bioinformatics Course Programme Fall 2026 ‎ →‎Wednesday, 28 October 2026 — B-cell epitope prediction
09:5709:57, 28 October 2026 diff hist +2‎ 22145 Immunological Bioinformatics Course Programme Fall 2026 ‎ →‎Wednesday, 30 September 2026 — Allergenicity and immunogenicity prediction
09:5709:57, 28 October 2026 diff hist +95‎ 22145 Immunological Bioinformatics Course Programme Fall 2026 ‎ →‎Wednesday, 30 September 2026 — Allergenicity and immunogenicity prediction
09:5509:55, 28 October 2026 diff hist +2‎ 22145 Immunological Bioinformatics Course Programme Fall 2026 ‎ →‎Wednesday, 21 October 2026 — BCR and TCR structure prediction
09:5509:55, 28 October 2026 diff hist 0‎ 22145 Immunological Bioinformatics Course Programme Fall 2026 ‎ →‎Wednesday, 28 October 2026 — B-cell epitope prediction
09:5409:54, 28 October 2026 diff hist +104‎ 22145 Immunological Bioinformatics Course Programme Fall 2026 ‎ →‎Wednesday, 28 October 2026 — B-cell epitope prediction
09:0109:01, 28 October 2026 diff hist 0‎ 22145 Immunological Bioinformatics Course Programme Fall 2026 ‎ →‎Wednesday, 11 November 2026 — Written EXAM

17:4517:45, 27 October 2026 diff hist 0‎ Bcell Epitope prediction ‎No edit summary
17:4417:44, 27 October 2026 diff hist +1‎ Bcell Epitope prediction ‎No edit summary
17:4417:44, 27 October 2026 diff hist −324‎ Bcell Epitope prediction ‎No edit summary

09:4109:41, 21 October 2026 diff hist 0‎ 22145 Immunological Bioinformatics Course Programme Fall 2026 ‎ →‎Wednesday, 11 November 2026 — Written EXAM
09:4009:40, 21 October 2026 diff hist +77‎ 22145 Immunological Bioinformatics Course Programme Fall 2026 ‎ →‎Wednesday, 28 October 2026 — B-cell epitope prediction
09:3909:39, 21 October 2026 diff hist −3‎ 22145 Immunological Bioinformatics Course Programme Fall 2026 ‎ →‎Wednesday, 21 October 2026 — BCR and TCR structure prediction
09:3809:38, 21 October 2026 diff hist +120‎ 22145 Immunological Bioinformatics Course Programme Fall 2026 ‎ →‎Lecture and exercise plan
04:1704:17, 21 October 2026 diff hist +2‎ Exercise:AntibodyStructurePrediction ‎ →‎Identifying mutations in the antibody sequence current
04:1604:16, 21 October 2026 diff hist +204‎ Exercise:AntibodyStructurePrediction ‎ →‎Identifying mutations in the antibody sequence
04:1404:14, 21 October 2026 diff hist 0‎ N File:Imgt GapAlign results VL.png ‎No edit summary current
04:1404:14, 21 October 2026 diff hist 0‎ N File:Imgt GapAlign results VH.png ‎No edit summary current
04:0004:00, 21 October 2026 diff hist +96‎ Exercise:AntibodyStructurePrediction ans ‎No edit summary current
03:5603:56, 21 October 2026 diff hist +979‎ Exercise:AntibodyStructurePrediction ans ‎No edit summary
03:3303:33, 21 October 2026 diff hist −12‎ Exercise:AntibodyStructurePrediction ans ‎ →‎Q6. Shape of the antigen-binding site
03:3203:32, 21 October 2026 diff hist −217‎ Exercise:AntibodyStructurePrediction ans ‎ →‎Q6. Shape of the antigen-binding site
03:3003:30, 21 October 2026 diff hist −5‎ Exercise:AntibodyStructurePrediction ans ‎ →‎Q9. Charged CDR residues
03:2903:29, 21 October 2026 diff hist −7‎ Exercise:AntibodyStructurePrediction ans ‎ →‎Q3. Sequence differences between target and templates
03:2803:28, 21 October 2026 diff hist −10‎ Exercise:AntibodyStructurePrediction ans ‎ →‎Q4. CDR loop lengths and expected accuracy
03:2803:28, 21 October 2026 diff hist −3‎ Exercise:AntibodyStructurePrediction ans ‎ →‎Q3. Sequence differences between target and templates
03:2703:27, 21 October 2026 diff hist −1,428‎ Exercise:AntibodyStructurePrediction ans ‎No edit summary
03:2503:25, 21 October 2026 diff hist +6‎ Exercise:AntibodyStructurePrediction ‎ →‎Visualizing the antigen-binding site
03:2403:24, 21 October 2026 diff hist +545‎ Exercise:AntibodyStructurePrediction ‎ →‎Part 1 — Identify the antibody regions
03:2003:20, 21 October 2026 diff hist −174‎ Exercise:AntibodyStructurePrediction ans ‎No edit summary
03:1803:18, 21 October 2026 diff hist +13,169‎ N Exercise:AntibodyStructurePrediction ans ‎ Created page with " __TOC__ = Antibody Structure Modelling — Teacher's Answers = '''Case study:''' SI135 antibody from chronic lymphocytic leukemia (CLL) '''LYRA prediction:''' [https://services.healthtech.dtu.dk/cgi-bin/webface2.cgi?jobid=6AD8166000282F67166ED625&wait=20 View the original modelling job] ''This page provides expected answers to Q1–Q11. Values marked [TO VERIFY] require inspection of the LYRA model, sequence alignment, or additional analyses.'' == Part 1 — Antibo..."
03:1403:14, 21 October 2026 diff hist −1‎ Exercise:AntibodyStructurePrediction ‎ →‎Part 1 — Identify the antibody regions
03:1403:14, 21 October 2026 diff hist +46‎ Exercise:AntibodyStructurePrediction ‎No edit summary
03:0803:08, 21 October 2026 diff hist 0‎ Exercise:AntibodyStructurePrediction ‎ →‎Part 1 — Identify the antibody regions

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