SNP calling exercise part 2: Revision history

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15 December 2024

29 November 2024

  • curprev 15:0615:06, 29 November 2024‎ Gabre talk contribs‎ 6,211 bytes +6,211‎ Created page with " <H2> Filtering</H2> We saw that the data contains some calls of poor quality. Ideally, we do not want to carry over these calls into downstream analyses. We will explore how to filter out genotype data. <H3> Hard filtering </H3> A major downside of soft filtering is that does not apply for samples for which we do not have a good representation of the genetic diversity. An alternative is to do hard filtering meaning filtering the variants according to predetermined..."
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