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1 October 2024
- 07:3107:31, 1 October 2024 diff hist +59 Exercise: BLAST3 →Part 3: using BLAST to transfer functional information by finding homologs
- 07:2907:29, 1 October 2024 diff hist +14 Exercise: BLAST3 →BLAST example 2
- 07:1307:13, 1 October 2024 diff hist +1 ExBlast-Answers3 No edit summary
- 04:5504:55, 1 October 2024 diff hist 0 Exercise: BLAST3 →Part 2.0: Create your first Python Notebook
- 04:2604:26, 1 October 2024 diff hist 0 Exercise: BLAST3 →Random protein sequences and BLASTP
- 04:2204:22, 1 October 2024 diff hist +9 ExBlast-Answers3 →Part 3: using BLAST to transfer functional information by finding homologs
- 04:1804:18, 1 October 2024 diff hist −157 Exercise: BLAST3 →BLAST example 2
- 04:1704:17, 1 October 2024 diff hist +9 Exercise: BLAST3 →BLAST example 1
- 04:1604:16, 1 October 2024 diff hist +129 Exercise: BLAST3 →Part 3: using BLAST to transfer functional information by finding homologs
- 04:1304:13, 1 October 2024 diff hist −348 ExBlast-Answers3 →Part 2: Assessing the statistical significance of BLAST hits
- 04:1104:11, 1 October 2024 diff hist −22 Exercise: BLAST3 →Random protein sequences and BLASTP
- 04:1004:10, 1 October 2024 diff hist −375 Exercise: BLAST3 →Random protein sequences and BLASTP
- 04:0704:07, 1 October 2024 diff hist 0 Exercise: BLAST3 →Random protein sequences and BLASTP
- 04:0404:04, 1 October 2024 diff hist −38 Exercise: BLAST3 →Random DNA sequences and BLASTN
- 02:3002:30, 1 October 2024 diff hist −3 Exercise: BLAST3 →Random DNA sequences and BLASTN
30 September 2024
- 20:2820:28, 30 September 2024 diff hist −166 Exercise: BLAST3 →Random DNA sequences and BLASTN
- 20:2620:26, 30 September 2024 diff hist −50 Exercise: BLAST3 →Random DNA sequences and BLASTN
- 20:2520:25, 30 September 2024 diff hist −50 Exercise: BLAST3 →Random DNA sequences and BLASTN
- 20:2420:24, 30 September 2024 diff hist −116 Exercise: BLAST3 →Random DNA sequences and BLASTN
- 20:2320:23, 30 September 2024 diff hist −117 ExBlast-Answers3 →QUESTION 2.2
- 20:1920:19, 30 September 2024 diff hist −77 Exercise: BLAST3 →Random DNA sequences and BLASTN
- 20:1620:16, 30 September 2024 diff hist −119 Exercise: BLAST3 →Random DNA sequences and BLASTN
- 20:1420:14, 30 September 2024 diff hist −17 Exercise: BLAST3 →Random DNA sequences and BLASTN
- 20:1220:12, 30 September 2024 diff hist −232 Exercise: BLAST3 →Random DNA sequences and BLASTN
- 20:0120:01, 30 September 2024 diff hist +2 Exercise: BLAST3 →Part 0: Create your first Python Notebook
- 20:0020:00, 30 September 2024 diff hist +1 Exercise: BLAST3 →Links
- 20:0020:00, 30 September 2024 diff hist −275 Exercise: BLAST3 →Links
- 19:5919:59, 30 September 2024 diff hist +2,825 Exercise: BLAST3 →Part 2: Assessing the statistical significance of BLAST hits
- 19:5419:54, 30 September 2024 diff hist −232 Exercise: BLAST3 →Part 2: Assessing the statistical significance of BLAST hits
- 19:4919:49, 30 September 2024 diff hist −18 ExBlast-Answers3 →Part 1: Your first BLAST search
- 19:4519:45, 30 September 2024 diff hist +4 ExBlast-Answers3 →QUESTION 1.4
- 19:4119:41, 30 September 2024 diff hist −14 ExBlast-Answers3 No edit summary
- 19:4019:40, 30 September 2024 diff hist −12 ExBlast-Answers3 No edit summary
- 19:3919:39, 30 September 2024 diff hist +23,383 N ExBlast-Answers3 Created page with "Answers to the BLAST exercise, by Henrik Nielsen. Values for database sizes etc. retrieved March 7, 2020 ==Part 1: Your first BLAST search== ===QUESTION 1.1=== * ''what is the identifier (Accession)?'' :OL351605 or M57671 (Note that the latter was also part of the sequence name for your query sequence!) * ''what is the alignment score ("Max score in bits")?'' :The max score is 780 bits (Raw score is 864) * ''what is the percent identity and query coverage?'' :100% * '..."
- 19:3719:37, 30 September 2024 diff hist +14 Exercise: BLAST3 →Part 1: Your first BLAST search
- 19:3619:36, 30 September 2024 diff hist +13 Exercise: BLAST3 →Search against Human G+T
- 19:2419:24, 30 September 2024 diff hist +3 Exercise: BLAST3 →Search against NR
- 19:2219:22, 30 September 2024 diff hist +1 Exercise: BLAST3 →Part 1: Your first BLAST search
- 19:1819:18, 30 September 2024 diff hist +4 Exercise: BLAST3 →Part 1: Your first BLAST search
- 19:1719:17, 30 September 2024 diff hist +52 Exercise: BLAST3 →Part 1: Your first BLAST search
- 18:5818:58, 30 September 2024 diff hist +1 Exercise: BLAST3 →Links
- 18:5618:56, 30 September 2024 diff hist −2 Exercise: BLAST3 →Introduction
- 18:5618:56, 30 September 2024 diff hist +8 Exercise: BLAST3 No edit summary
21 September 2024
- 21:5521:55, 21 September 2024 diff hist −56 Exercise: BLAST3 No edit summary
- 21:4921:49, 21 September 2024 diff hist −75 Exercise: BLAST3 →BLASTN search
- 21:4321:43, 21 September 2024 diff hist −18 Exercise: BLAST3 No edit summary
- 21:4021:40, 21 September 2024 diff hist −11 Exercise: BLAST3 No edit summary
- 21:1321:13, 21 September 2024 diff hist +309 Exercise: BLAST3 No edit summary
- 20:5520:55, 21 September 2024 diff hist −1 Exercise: BLAST3 No edit summary
- 20:5420:54, 21 September 2024 diff hist +30,146 N Exercise: BLAST3 Created page with "Exercise written by Rasmus Wernersson and modified by Henrik Nielsen and Carolina Barra. ==Introduction== In this exercise, we will be using BLAST ('''B'''asic '''L'''ocal '''A'''lignment '''S'''earch '''T'''ool) for searching homologous sequences to our query on databases such as GenBank (DNA data) and UniProt (protein). When using BLAST it is of utmost importance to be able to critically evaluate the statistical significance of the results returned. The BLAST softwa..."