The answer to the PSSM exercise
pep2mat_ans.py
pep2score_ans.py
You can also see the output from the calcutations in
A0201.single_lig_mat
A0201.mat_b0_small.lig
A0201.mat_b50_small.lig
A0201.mat_small.lig_sw
A0201.mat_large.lig_sw
A0201.eval scored against A0201.mat_large.lig_sw
The Pearson's correlations should be
Pearson coefficient for N= 1266 data: 0.29528 for A0201.mat_b0_small.lig Pearson coefficient for N= 1266 data: 0.40009 for A0201.mat_b50_small.lig Pearson coefficient for N= 1266 data: 0.47668 for A0201.mat_small.lig_sw Pearson coefficient for N= 1266 data: 0.70148 for A0201.mat_large.lig_sw