NCBI Blast:(2)

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Search Parameters
Search parameter name	Search parameter value
Program	blastp
Word size	3
Expect value	0.05
Hitlist size	500
Gapcosts	11,1
Matrix	BLOSUM62
Filter string	F
Genetic Code	1
Window Size	40
Threshold	11
Composition-based stats	1

Database
Database parameter name	Database parameter value
Posted date	Sep 30, 2025 4:22 AM
Number of letters	50,831,598
Number of sequences	176,847
Entrez query	Includes: Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	0.321892	0.267
K	0.138425	0.0400917
H	0.375507	0.14
Alpha	0.7916	1.9
Alpha_v	4.96466	42.6028
Sigma		43.6362

Job Title

QUERY1 ...

RID

H3AFCT4A014 Search expires on 11-11 16:01 pm

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Results for

Program

PSI-BLAST Iteration 1

Citation
Reference
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference - composition-based statistics starting in round 2
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.

Database

pdb

See details

Query ID

lcl|Query_8296250

Description

QUERY1 ...

Molecule type

amino acid

Query Length

457

Other reports

Distance tree of results Multiple alignment MSA viewer

Filter Results

Run PSI-Blast iteration 2

Descriptions

31 sequences selected

, Reading indexes 1-5, displaying indexes 1-5

Sequences with E-value BETTER than threshold

select all
18 sequences selected

PSI-BLAST iteration 1

Sequences producing significant alignments with E-value BETTER than threshold
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession	Select for PSI blast
1Select seq pdb\|4A8E\|A	Chain A, PROBABLE TYROSINE RECOMBINASE XERC-LIKE [Pyrococcus abyssi]	Pyrococcus abyssi	NA	29292	187	187	65%	3e-55	17.63%	292	4A8E_A(scored below threshold on previous iteration)	Select seq 4A8E_A for PSI blast
2Select seq pdb\|5HXY\|A	Chain A, Tyrosine recombinase XerA [Thermoplasma acidophilum DSM 1728]	Thermoplasma acidophilum DSM 1728	NA	273075	150	150	61%	3e-41	17.87%	317	5HXY_A(scored below threshold on previous iteration)	Select seq 5HXY_A for PSI blast
3Select seq pdb\|5DCF\|A	Chain A, Tyrosine recombinase XerD,DNA translocase FtsK [synthetic construct]	synthetic construct	NA	32630	127	127	44%	5e-33	15.46%	275	5DCF_A(scored below threshold on previous iteration)	Select seq 5DCF_A for PSI blast
4Select seq pdb\|1A0P\|A	Chain A, SITE-SPECIFIC RECOMBINASE XERD [Escherichia coli]	Escherichia coli	NA	562	127	127	63%	5e-33	14.01%	290	1A0P_A(scored below threshold on previous iteration)	Select seq 1A0P_A for PSI blast
5Select seq pdb\|2A3V\|A	Chain A, site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor str. N16961]	Vibrio cholerae O1 biovar El Tor str. N16961	NA	243277	106	106	60%	5e-25	16.12%	320	2A3V_A(scored below threshold on previous iteration)	Select seq 2A3V_A for PSI blast
6Select seq pdb\|9I5V\|14	Chain 14, Ribosome-associated translation inhibitor RaiA [Porphyromonas gingivalis]	Porphyromonas gingivalis	NA	837	94.4	94.4	57%	2e-20	16.54%	401	9I5V_14(scored below threshold on previous iteration)	Select seq 9I5V_14 for PSI blast
7Select seq pdb\|5VFZ\|A	Chain A, Gp33 [Brujitavirus brujita]	Brujitavirus brujita	NA	561996	82.8	82.8	46%	7e-17	16.83%	318	5VFZ_A(scored below threshold on previous iteration)	Select seq 5VFZ_A for PSI blast
8Select seq pdb\|6EN0\|A	Chain A, Int protein [Enterococcus faecalis]	Enterococcus faecalis	NA	1351	80.5	80.5	57%	4e-16	13.78%	317	6EN0_A(scored below threshold on previous iteration)	Select seq 6EN0_A for PSI blast
9Select seq pdb\|6EMY\|A	Chain A, Int protein [Enterococcus faecalis]	Enterococcus faecalis	NA	1351	80.5	80.5	57%	5e-16	13.78%	317	6EMY_A(scored below threshold on previous iteration)	Select seq 6EMY_A for PSI blast
10Select seq pdb\|6EMZ\|A	Chain A, Int protein [Enterococcus faecalis]	Enterococcus faecalis	NA	1351	77.5	77.5	57%	5e-15	13.43%	317	6EMZ_A(scored below threshold on previous iteration)	Select seq 6EMZ_A for PSI blast
11Select seq pdb\|5JJV\|A	Chain A, Tyrosine recombinase XerH [Helicobacter pylori 26695]	Helicobacter pylori 26695	NA	85962	77.5	77.5	43%	7e-15	18.05%	363	5JJV_A(scored below threshold on previous iteration)	Select seq 5JJV_A for PSI blast
12Select seq pdb\|5C6K\|A	Chain A, Integrase [Peduovirus P2]	Peduovirus P2	NA	10679	67.1	67.1	44%	1e-11	18.23%	292	5C6K_A(scored below threshold on previous iteration)	Select seq 5C6K_A for PSI blast
13Select seq pdb\|5DOR\|A	Chain A, Integrase [Peduovirus P2]	Peduovirus P2	NA	10679	62.4	62.4	42%	7e-11	18.23%	176	5DOR_A(scored below threshold on previous iteration)	Select seq 5DOR_A for PSI blast
14Select seq pdb\|3NKH\|A	Chain A, Integrase [Staphylococcus aureus subsp. aureus USA300_TCH1516]	Staphylococcus aureus subsp. aureus USA300_TCH1516	NA	451516	59.3	59.3	43%	3e-09	16.74%	244	3NKH_A(scored below threshold on previous iteration)	Select seq 3NKH_A for PSI blast
15Select seq pdb\|1AIH\|A	Chain A, HP1 INTEGRASE [Hpunavirus HP1]	Hpunavirus HP1	NA	10690	52.4	52.4	41%	2e-07	10.94%	170	1AIH_A(scored below threshold on previous iteration)	Select seq 1AIH_A for PSI blast
16Select seq pdb\|3VCF\|A	Chain A, Probable integrase [Sulfolobus spindle-shaped virus 1]	Sulfolobus spindle-shaped virus 1	NA	244589	44.7	44.7	43%	8e-05	16.67%	163	3VCF_A(scored below threshold on previous iteration)	Select seq 3VCF_A for PSI blast
17Select seq pdb\|4DKS\|A	Chain A, Probable integrase [Sulfolobus spindle-shaped virus 1]	Sulfolobus spindle-shaped virus 1	NA	244589	44.7	44.7	43%	8e-05	16.67%	162	4DKS_A(scored below threshold on previous iteration)	Select seq 4DKS_A for PSI blast
18Select seq pdb\|3UXU\|A	Chain A, Probable integrase [Sulfolobus spindle-shaped virus 1]	Sulfolobus spindle-shaped virus 1	NA	244589	44.3	44.3	43%	1e-04	16.67%	169	3UXU_A(scored below threshold on previous iteration)	Select seq 3UXU_A for PSI blast

Sequences with E-value WORSE than threshold

select all
13 sequences selected

PSI-BLAST iteration 1

Sequences with E-value WORSE than threshold
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession	Select for PSI blast
19Select seq pdb\|7RHY\|A	Chain A, Recombinase cre [Punavirus P1]	Punavirus P1	NA	10678	40.1	40.1	55%	0.007	10.65%	343	7RHY_A(scored below threshold on previous iteration)	Select seq 7RHY_A for PSI blast
20Select seq pdb\|1Q3U\|A	Chain A, Cre recombinase [Punavirus P1]	Punavirus P1	NA	10678	39.3	39.3	70%	0.016	9.39%	347	1Q3U_A(scored below threshold on previous iteration)	Select seq 1Q3U_A for PSI blast
21Select seq pdb\|5CRX\|A	Chain A, PROTEIN (BACTERIOPHAGE P1 CRE GENE) [Punavirus P1]	Punavirus P1	NA	10678	38.9	38.9	70%	0.016	9.39%	343	5CRX_A(scored below threshold on previous iteration)	Select seq 5CRX_A for PSI blast
22Select seq pdb\|1NZB\|A	Chain A, Cre recombinase [Punavirus P1]	Punavirus P1	NA	10678	38.9	38.9	70%	0.019	9.39%	343	1NZB_A(scored below threshold on previous iteration)	Select seq 1NZB_A for PSI blast
23Select seq pdb\|7RHZ\|B	Chain B, Recombinase cre [Punavirus P1]	Punavirus P1	NA	10678	38.5	38.5	70%	0.023	9.76%	343	7RHZ_B(scored below threshold on previous iteration)	Select seq 7RHZ_B for PSI blast
24Select seq pdb\|1KBU\|A	Chain A, CRE RECOMBINASE [Punavirus P1]	Punavirus P1	NA	10678	38.5	38.5	69%	0.028	9.54%	349	1KBU_A(scored below threshold on previous iteration)	Select seq 1KBU_A for PSI blast
25Select seq pdb\|1PVQ\|A	Chain A, Recombinase cre [Punavirus P1]	Punavirus P1	NA	10678	38.2	38.2	46%	0.033	8.76%	349	1PVQ_A(scored below threshold on previous iteration)	Select seq 1PVQ_A for PSI blast
26Select seq pdb\|1PVP\|A	Chain A, Recombinase cre [Punavirus P1]	Punavirus P1	NA	10678	38.2	38.2	46%	0.036	8.76%	349	1PVP_A(scored below threshold on previous iteration)	Select seq 1PVP_A for PSI blast
27Select seq pdb\|2HOF\|A	Chain A, Recombinase cre [Punavirus P1]	Punavirus P1	NA	10678	37.8	37.8	47%	0.039	8.56%	343	2HOF_A(scored below threshold on previous iteration)	Select seq 2HOF_A for PSI blast
28Select seq pdb\|1F44\|A	Chain A, CRE RECOMBINASE [Punavirus P1]	Punavirus P1	NA	10678	37.8	37.8	55%	0.041	10.65%	324	1F44_A(scored below threshold on previous iteration)	Select seq 1F44_A for PSI blast
29Select seq pdb\|1DRG\|A	Chain A, CRE RECOMBINASE [Punavirus P1]	Punavirus P1	NA	10678	37.8	37.8	55%	0.043	10.65%	323	1DRG_A(scored below threshold on previous iteration)	Select seq 1DRG_A for PSI blast
30Select seq pdb\|1XNS\|A	Chain A, Recombinase CRE [Punavirus P1]	Punavirus P1	NA	10678	37.8	37.8	55%	0.044	10.65%	324	1XNS_A(scored below threshold on previous iteration)	Select seq 1XNS_A for PSI blast
31Select seq pdb\|1CRX\|B	Chain B, Cre recombinase [Punavirus P1]	Punavirus P1	NA	10678	37.8	37.8	55%	0.046	10.65%	322	1CRX_B(scored below threshold on previous iteration)	Select seq 1CRX_B for PSI blast

- hover to see the title
- click to show alignments
- Show Conserved Domains
- Alignment Scores
- < 40
- 40 - 50
- 50 - 80
- 80 - 200
- >= 200
- Help
  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
- 31 sequences selected
- Help
Putative conserved domains have been detected, click on the image below for detailed results.

Distribution of the top 31 Blast Hits on 31 subject sequences

Query

1
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Alignments

31 sequences selected
Help

Download GenPept Graphics Next Previous Descriptions

Chain A, PROBABLE TYROSINE RECOMBINASE XERC-LIKE [Pyrococcus abyssi]

Sequence ID: 4A8E_ALength: 292Number of Matches: 1

Related Information

Structure-3D structure displays

Range 1: 10 to 278GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
187 bits(474)	3e-55()	Composition-based stats.	52/295(18%)	107/295(36%)	26/295(8%)

Query  159  IGFILLNEVYSNLFSSRYTTISIFTLIVSYMLFIRNKIISSEEEEQIEYEKVATSYISSL  218
               I     Y  L      T+ ++T  +S      +   + +    +   K       SL
Sbjct  10   DDTIEEFATYLELEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLKRKGYSTRSL  69

Query  219  INRILNTKFTENTTTIGQDKQLYDSFKTPKIQYGAKVPVKLEEIKEVAKNIEHIPSKAYF  278
               ++           G D +  +  KTPK+       +  EE++ +    E +  +   
Sbjct  70   --NLVIQALKAYFKFEGLDSE-AEKLKTPKMPKTLPKSLTEEEVRRIINAAETLRDRLIL  126

Query  279  VLLAESGLRPGELLNVSIENIDLKARIIWINKETQTKRAYFSFFSRKTAEFLEKVYLPAR  338
            +LL  +GLR  EL N+ +E+++ +  +I +      K       S      +++ YL +R
Sbjct  127  LLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGK-DRVVPISESLLSEIKR-YLESR  184

Query  339  EEFIRANEKNIAKLAAANENQEIDLEKWKAKLFPYKDDVLRRKIYEAMDRALGKRFELYA  398
             +                ++  + +E  + +        + R + +   +A G     + 
Sbjct  185  ND----------------DSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKA-GVELTPHQ  227

Query  399  LRRHFATYMQLKKVPPLAINILQGRVGPNEFRILKENYTVFTIEDLRKLYDEAGL  453
            LR  FAT+M  + +    I  L G    +  +I    YT  + + L++   +A L
Sbjct  228  LRHSFATHMLERGIDIRIIQELLGHSNLSTTQI----YTKVSTKHLKEAVKKAKL  278

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Chain A, Tyrosine recombinase XerA [Thermoplasma acidophilum DSM 1728]

Sequence ID: 5HXY_ALength: 317Number of Matches: 1

See 5 more title(s) See all Identical Proteins(IPG)

Chain B, Tyrosine recombinase XerA [Thermoplasma acidophilum DSM 1728]
Sequence ID: 5HXY_BLength: 317Number of Matches:

Chain C, Tyrosine recombinase XerA [Thermoplasma acidophilum DSM 1728]
Sequence ID: 5HXY_CLength: 317Number of Matches:

Chain D, Tyrosine recombinase XerA [Thermoplasma acidophilum DSM 1728]
Sequence ID: 5HXY_DLength: 317Number of Matches:

Chain E, Tyrosine recombinase XerA [Thermoplasma acidophilum DSM 1728]
Sequence ID: 5HXY_ELength: 317Number of Matches:

Chain F, Tyrosine recombinase XerA [Thermoplasma acidophilum DSM 1728]
Sequence ID: 5HXY_FLength: 317Number of Matches:

Related Information

Structure-3D structure displays

Identical Proteins-Identical proteins to 5HXY_A

Range 1: 48 to 316GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
150 bits(379)	3e-41()	Composition-based stats.	52/291(18%)	95/291(32%)	33/291(11%)

Query  175  RYTTISIFTLI-VSYMLFIRNKIISSEEEEQIEYEKVATSYISSLINRILNTKFTENTTT  233
             Y T    +   +    F+ ++ +S   ++  E          + +        T     
Sbjct  48   EYXTGERKSRYTIKEYRFLVDQFLSFXNKKPDEITPXDIERYKNFLAVKKRYSKTSQYLA  107

Query  234  IGQDKQLYDSF--------KTPKIQYGAKVPVKLEEIKEVAKNIE-HIPSKAYFVLLAES  284
            I   K  Y +           PK      V +  +E K + +         A   +LA +
Sbjct  108  IKAVKLFYKALDLRVPINLTPPKRPSHXPVYLSEDEAKRLIEAASSDTRXYAIVSVLAYT  167

Query  285  GLRPGELLNVSIENIDLKARIIWINKETQTKRAYFSFFSRKTAEFLEKVYLPAREEFIRA  344
            G+R GEL N+ I ++DL+  II +      K       + +  + L   YL  R      
Sbjct  168  GVRVGELCNLKISDVDLQESIINVRSGKGDK-DRIVIXAEECVKAL-GSYLDLR------  219

Query  345  NEKNIAKLAAANENQEIDLEKWKAKLFPYKDDVLRRKIYEAMDRALG-KRFELYALRRHF  403
                   L+   +N  + +   + +   +    + R I +   +A   K+   + LR  F
Sbjct  220  -------LSXDTDNDYLFVSNRRVR---FDTSTIERXIRDLGKKAGIQKKVTPHVLRHTF  269

Query  404  ATYMQLKKVPPLAINILQGRVGPNEFRILKENYTVFTIEDLRKLYDEAGLV  454
            AT +         I  + G       +I    YT      LR+ Y +    
Sbjct  270  ATSVLRNGGDIRFIQQILGHASVATTQI----YTHLNDSALREXYTQHRPR  316

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Chain A, Tyrosine recombinase XerD,DNA translocase FtsK [synthetic construct]

Sequence ID: 5DCF_ALength: 275Number of Matches: 1

Related Information

Structure-3D structure displays

Range 1: 2 to 188GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
127 bits(319)	5e-33()	Composition-based stats.	32/207(15%)	72/207(34%)	27/207(13%)

Query  255  VPVKLEEIKEVAKN--IEHI---PSKAYFVLLAESGLRPGELLNVSIENIDLKARIIWIN  309
              +   +++ + +   I+       KA   +L  +GLR  EL+ +++ +I L+  ++ + 
Sbjct  2    KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI  61

Query  310  KETQTKRAYFSFFSRKTAEFLEKVYLPAREEFIRANEKNIAKLAAANENQEIDLEKWKAK  369
               +  +        +   +L + YL     ++                  ID+     +
Sbjct  62   G--KGNKERLVPLGEEAVYWL-ETYLEHGRPWLLN-------------GVSIDVLFPSQR  105

Query  370  LFPYKDDVLRRKIYEAMDRALG--KRFELYALRRHFATYMQLKKVPPLAINILQGRVGPN  427
                       +I      A    ++   + LR  FAT++         + +L G    +
Sbjct  106  AQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLS  165

Query  428  EFRILKENYTVFTIEDLRKLYDEAGLV  454
              +I    YT    E LR+L+ +    
Sbjct  166  TTQI----YTHVATERLRQLHQQHHPR  188

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Chain A, SITE-SPECIFIC RECOMBINASE XERD [Escherichia coli]

Sequence ID: 1A0P_ALength: 290Number of Matches: 1

Related Information

Structure-3D structure displays

Range 1: 6 to 287GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
127 bits(320)	5e-33()	Composition-based stats.	43/307(14%)	100/307(32%)	45/307(14%)

Query  160  GFILLNEVYSNLFSSRYTTISIFTLIVSYMLFIR------------NKIISSEEEEQIEY  207
                L+ ++    +    T++ +   +S M+               + + +   E     
Sbjct  6    IEQFLDALWLE-KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG  64

Query  208  EKVATSY-ISSLINRILNTKFTENTTTIGQDKQLYDSFKTPKIQYGAKVPVKLEEIKEVA  266
             K  +S  + S + R+    + E                +PK+       +   +++ + 
Sbjct  65   YKATSSARLLSAVRRLFQYLYREKFRE----DDPSAHLASPKLPQRLPKDLSEAQVERLL  120

Query  267  KN--IEHI---PSKAYFVLLAESGLRPGELLNVSIENIDLKARIIWINKETQTKRAYFSF  321
            +   I+       KA   +L  +GLR  EL+ +++ +I L+  ++ +    +  +     
Sbjct  121  QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIG--KGNKERLVP  178

Query  322  FSRKTAEFLEKVYLPAREEFIRANEKNIAKLAAANENQEIDLEKWKAKLFPYKDDVLRRK  381
               +   +L + YL     ++                  ID+     +           +
Sbjct  179  LGEEAVYWL-ETYLEHGRPWLLN-------------GVSIDVLFPSQRAQQMTRQTFWHR  224

Query  382  IYEAMDRALG--KRFELYALRRHFATYMQLKKVPPLAINILQGRVGPNEFRILKENYTVF  439
            I      A    ++   + LR  FAT++         + +L G    +  +I    YT  
Sbjct  225  IKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQI----YTHV  280

Query  440  TIEDLRK  446
              E LR+
Sbjct  281  ATERLRQ  287

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Chain A, site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor str. N16961]

Sequence ID: 2A3V_ALength: 320Number of Matches: 1

See 3 more title(s) See all Identical Proteins(IPG)

Chain B, site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor str. N16961]
Sequence ID: 2A3V_BLength: 320Number of Matches:

Chain C, site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor str. N16961]
Sequence ID: 2A3V_CLength: 320Number of Matches:

Chain D, site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor str. N16961]
Sequence ID: 2A3V_DLength: 320Number of Matches:

Related Information

Structure-3D structure displays

Identical Proteins-Identical proteins to 2A3V_A

Range 1: 12 to 308GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
106 bits(264)	5e-25()	Composition-based stats.	49/304(16%)	92/304(30%)	36/304(11%)

Query  168  YSNLFSSRYTTISIFTLIVSYML-FIRNKIISSEE----EEQIEYEKVATSYISSLINRI  222
            +         TI  +   ++  + F   K  S       EE + Y  V     +   +  
Sbjct  12   FMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLA  71

Query  223  LNTKFTENTTTIGQDKQLYDSFKTPKIQYGAKVPVKLEEIKEVAKNIEHIPSKAYFVLLA  282
            LN+        +     L   F+  +++    V +  +EI+ + + I     +    LL 
Sbjct  72   LNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLE-IVDPKHQLPIKLLY  130

Query  283  ESGLRPGELLNVSIENIDLKARIIWINKETQTKRAYFSFFSR------KTAEFLEKVYLP  336
             SGLR  E + + +++ID     I I +    K    +          +     ++ Y  
Sbjct  131  GSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYY--  188

Query  337  AREEFIRANEKNIAKLAAANENQEIDLEKWKAKLFP-----------------YKDDVLR  379
             R+   +         A   +      E     LFP                   + VL+
Sbjct  189  DRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQ  248

Query  380  RKIYEAMDRAL-GKRFELYALRRHFATYMQLKKVPPLAINILQGRVGPNEFRILKENYTV  438
            + +  +   A   K    + LR  FAT++         +    G       +I    YT 
Sbjct  249  KAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQI----YTH  304

Query  439  FTIE  442
                
Sbjct  305  VLDR  308

Taxonomy

31 sequences selected
Help

Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
root			99
.cellular organisms			31
..Methanobacteriati	archaea		7
...Pyrococcus abyssi	euryarchaeotes	187	1	Pyrococcus abyssi hits
...Thermoplasma acidophilum DSM 1728	archaea	150	6	Thermoplasma acidophilum DSM 1728 hits
..Escherichia coli	enterobacteria	127	1	Escherichia coli hits
..Vibrio cholerae O1 biovar El Tor str. N16961	g-proteobacteria	106	4	Vibrio cholerae O1 biovar El Tor str. N16961 hits
..Porphyromonas gingivalis	CFB group bacteria	94.4	1	Porphyromonas gingivalis hits
..Enterococcus faecalis	firmicutes	80.5	10	Enterococcus faecalis hits
..Helicobacter pylori 26695	e-proteobacteria	77.5	6	Helicobacter pylori 26695 hits
..Staphylococcus aureus subsp. aureus USA300_TCH1516	firmicutes	59.3	2	Staphylococcus aureus subsp. aureus USA300_TCH1516 hits
.synthetic construct	other sequences	127	1	synthetic construct hits
.Brujitavirus brujita	viruses	82.8	1	Brujitavirus brujita hits
.Peduovirus P2	viruses	67.1	6	Peduovirus P2 hits
.Hpunavirus HP1	viruses	52.4	4	Hpunavirus HP1 hits
.Sulfolobus spindle-shaped virus 1	viruses	44.7	4	Sulfolobus spindle-shaped virus 1 hits
.Punavirus P1	viruses	40.1	52	Punavirus P1 hits

Organism

Organism Report
Description	Score	E value	Accession
Pyrococcus abyssi [euryarchaeotes] Next Previous First
Chain A, PROBABLE TYROSINE RECOMBINASE XERC-LIKE [Pyrococcus abyssi]	187	3e-55	4A8E_A
Thermoplasma acidophilum DSM 1728 [archaea] Next Previous First
Chain A, Tyrosine recombinase XerA [Thermoplasma acidophilum DSM 1728]	150	3e-41	5HXY_A
Chain B, Tyrosine recombinase XerA [Thermoplasma acidophilum DSM 1728]	150	3e-41	5HXY_B
Chain C, Tyrosine recombinase XerA [Thermoplasma acidophilum DSM 1728]	150	3e-41	5HXY_C
Chain D, Tyrosine recombinase XerA [Thermoplasma acidophilum DSM 1728]	150	3e-41	5HXY_D
Chain E, Tyrosine recombinase XerA [Thermoplasma acidophilum DSM 1728]	150	3e-41	5HXY_E
Chain F, Tyrosine recombinase XerA [Thermoplasma acidophilum DSM 1728]	150	3e-41	5HXY_F
synthetic construct [other sequences] Next Previous First
Chain A, Tyrosine recombinase XerD,DNA translocase FtsK [synthetic construct]	127	5e-33	5DCF_A
Escherichia coli [enterobacteria] Next Previous First
Chain A, SITE-SPECIFIC RECOMBINASE XERD [Escherichia coli]	127	5e-33	1A0P_A
Vibrio cholerae O1 biovar El Tor str. N16961 [g-proteobacteria] Next Previous First
Chain A, site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor str. N16961]	106	5e-25	2A3V_A
Chain B, site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor str. N16961]	106	5e-25	2A3V_B
Chain C, site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor str. N16961]	106	5e-25	2A3V_C
Chain D, site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor str. N16961]	106	5e-25	2A3V_D
Porphyromonas gingivalis [CFB group bacteria] Next Previous First
Chain 14, Ribosome-associated translation inhibitor RaiA [Porphyromonas gingivalis]	94.4	2e-20	9I5V_14
Brujitavirus brujita [viruses] Next Previous First
Chain A, Gp33 [Brujitavirus brujita]	82.8	7e-17	5VFZ_A
Enterococcus faecalis [firmicutes] Next Previous First
Chain A, Int protein [Enterococcus faecalis]	80.5	4e-16	6EN0_A
Chain B, Int protein [Enterococcus faecalis]	80.5	4e-16	6EN0_B
Chain A, Int protein [Enterococcus faecalis]	80.5	5e-16	6EMY_A
Chain B, Int protein [Enterococcus faecalis]	80.5	5e-16	6EMY_B
Chain A, Int protein [Enterococcus faecalis]	77.5	5e-15	6EMZ_A
Chain B, Int protein [Enterococcus faecalis]	77.5	5e-15	6EMZ_B
Chain A, Int protein [Enterococcus faecalis]	77.5	5e-15	6EN1_A
Chain B, Int protein [Enterococcus faecalis]	77.5	5e-15	6EN1_B
Chain A, Int protein [Enterococcus faecalis]	77.5	5e-15	6EN2_A
Chain B, Int protein [Enterococcus faecalis]	77.5	5e-15	6EN2_B
Helicobacter pylori 26695 [e-proteobacteria] Next Previous First
Chain A, Tyrosine recombinase XerH [Helicobacter pylori 26695]	77.5	7e-15	5JJV_A
Chain B, Tyrosine recombinase XerH [Helicobacter pylori 26695]	77.5	7e-15	5JJV_B
Chain A, Tyrosine recombinase XerH [Helicobacter pylori 26695]	77.5	7e-15	5JK0_A
Chain B, Tyrosine recombinase XerH [Helicobacter pylori 26695]	77.5	7e-15	5JK0_B
Chain C, Tyrosine recombinase XerH [Helicobacter pylori 26695]	77.5	7e-15	5JK0_C
Chain D, Tyrosine recombinase XerH [Helicobacter pylori 26695]	77.5	7e-15	5JK0_D
Peduovirus P2 [viruses] Next Previous First
Chain A, Integrase [Peduovirus P2]	67.1	1e-11	5C6K_A
Chain B, Integrase [Peduovirus P2]	67.1	1e-11	5C6K_B
Chain A, Integrase [Peduovirus P2]	62.4	7e-11	5DOR_A
Chain B, Integrase [Peduovirus P2]	62.4	7e-11	5DOR_B
Chain C, Integrase [Peduovirus P2]	62.4	7e-11	5DOR_C
Chain D, Integrase [Peduovirus P2]	62.4	7e-11	5DOR_D
Staphylococcus aureus subsp. aureus USA300_TCH1516 [firmicutes] Next Previous First
Chain A, Integrase [Staphylococcus aureus subsp. aureus USA300_TCH1516]	59.3	3e-09	3NKH_A
Chain B, Integrase [Staphylococcus aureus subsp. aureus USA300_TCH1516]	59.3	3e-09	3NKH_B
Hpunavirus HP1 [viruses] Next Previous First
Chain A, HP1 INTEGRASE [Hpunavirus HP1]	52.4	2e-07	1AIH_A
Chain B, HP1 INTEGRASE [Hpunavirus HP1]	52.4	2e-07	1AIH_B
Chain C, HP1 INTEGRASE [Hpunavirus HP1]	52.4	2e-07	1AIH_C
Chain D, HP1 INTEGRASE [Hpunavirus HP1]	52.4	2e-07	1AIH_D
Sulfolobus spindle-shaped virus 1 [viruses] Next Previous First
Chain A, Probable integrase [Sulfolobus spindle-shaped virus 1]	44.7	8e-05	3VCF_A
Chain B, Probable integrase [Sulfolobus spindle-shaped virus 1]	44.7	8e-05	3VCF_B
Chain A, Probable integrase [Sulfolobus spindle-shaped virus 1]	44.7	8e-05	4DKS_A
Chain A, Probable integrase [Sulfolobus spindle-shaped virus 1]	44.3	1e-04	3UXU_A
Punavirus P1 [viruses] Next Previous First
Chain A, Recombinase cre [Punavirus P1]	40.1	0.007	7RHY_A
Chain A, Recombinase cre [Punavirus P1]	40.1	0.007	7RHZ_A
Chain A, Cre recombinase [Punavirus P1]	39.3	0.016	1Q3U_A
Chain B, Cre recombinase [Punavirus P1]	39.3	0.016	1Q3U_B
Chain E, Cre recombinase [Punavirus P1]	39.3	0.016	1Q3U_E
Chain F, Cre recombinase [Punavirus P1]	39.3	0.016	1Q3U_F
Chain A, Cre recombinase [Punavirus P1]	39.3	0.016	1Q3V_A
Chain B, Cre recombinase [Punavirus P1]	39.3	0.016	1Q3V_B
Chain E, Cre recombinase [Punavirus P1]	39.3	0.016	1Q3V_E
Chain F, Cre recombinase [Punavirus P1]	39.3	0.016	1Q3V_F
Chain A, PROTEIN (BACTERIOPHAGE P1 CRE GENE) [Punavirus P1]	38.9	0.016	5CRX_A
Chain B, PROTEIN (BACTERIOPHAGE P1 CRE GENE) [Punavirus P1]	38.9	0.016	5CRX_B
Chain A, Cre recombinase [Punavirus P1]	38.9	0.019	1NZB_A
Chain B, Cre recombinase [Punavirus P1]	38.9	0.019	1NZB_B
Chain E, Cre recombinase [Punavirus P1]	38.9	0.019	1NZB_E
Chain F, Cre recombinase [Punavirus P1]	38.9	0.019	1NZB_F
Chain A, Cre recombinase [Punavirus P1]	38.9	0.019	1OUQ_A
Chain B, Cre recombinase [Punavirus P1]	38.9	0.019	1OUQ_B
Chain E, Cre recombinase [Punavirus P1]	38.9	0.019	1OUQ_E
Chain F, Cre recombinase [Punavirus P1]	38.9	0.019	1OUQ_F
Chain A, PROTEIN (CRE RECOMBINASE) [Punavirus P1]	38.9	0.019	2CRX_A
Chain B, PROTEIN (CRE RECOMBINASE) [Punavirus P1]	38.9	0.019	2CRX_B
Chain A, Recombinase cre [Punavirus P1]	38.9	0.019	3MGV_A
Chain B, Recombinase cre [Punavirus P1]	38.9	0.019	3MGV_B
Chain C, Recombinase cre [Punavirus P1]	38.9	0.019	3MGV_C
Chain D, Recombinase cre [Punavirus P1]	38.9	0.019	3MGV_D
Chain B, Recombinase cre [Punavirus P1]	38.5	0.023	7RHZ_B
Chain A, CRE RECOMBINASE [Punavirus P1]	38.5	0.028	1KBU_A
Chain B, CRE RECOMBINASE [Punavirus P1]	38.5	0.028	1KBU_B
Chain A, CRE RECOMBINASE [Punavirus P1]	38.5	0.028	1MA7_A
Chain B, CRE RECOMBINASE [Punavirus P1]	38.5	0.028	1MA7_B
Chain A, Recombinase cre [Punavirus P1]	38.2	0.033	1PVQ_A
Chain B, Recombinase cre [Punavirus P1]	38.2	0.033	1PVQ_B
Chain A, Recombinase CRE [Punavirus P1]	38.2	0.033	1PVR_A
Chain B, Recombinase CRE [Punavirus P1]	38.2	0.033	1PVR_B
Chain A, Recombinase cre [Punavirus P1]	38.2	0.036	1PVP_A
Chain B, Recombinase cre [Punavirus P1]	38.2	0.036	1PVP_B
Chain A, Recombinase cre [Punavirus P1]	37.8	0.039	2HOF_A
Chain B, Recombinase cre [Punavirus P1]	37.8	0.039	2HOF_B
Chain A, Recombinase Cre [Punavirus P1]	37.8	0.039	2HOI_A
Chain B, Recombinase Cre [Punavirus P1]	37.8	0.039	2HOI_B
Chain G, Recombinase Cre [Punavirus P1]	37.8	0.039	2HOI_G
Chain H, Recombinase Cre [Punavirus P1]	37.8	0.039	2HOI_H
Chain A, Recombinase cre [Punavirus P1]	37.8	0.039	7RHX_A
Chain B, Recombinase cre [Punavirus P1]	37.8	0.039	7RHX_B
Chain G, Recombinase cre [Punavirus P1]	37.8	0.039	7RHX_G
Chain H, Recombinase cre [Punavirus P1]	37.8	0.039	7RHX_H
Chain A, CRE RECOMBINASE [Punavirus P1]	37.8	0.041	1F44_A
Chain A, CRE RECOMBINASE [Punavirus P1]	37.8	0.043	1DRG_A
Chain A, Recombinase CRE [Punavirus P1]	37.8	0.044	1XNS_A
Chain B, Recombinase CRE [Punavirus P1]	37.8	0.044	1XNS_B
Chain B, Cre recombinase [Punavirus P1]	37.8	0.046	1CRX_B

Taxonomy

Taxonomy Report
Taxonomy	Number of hits	Number of Organisms	Description
root	99	14
. cellular organisms	31	8
.. Methanobacteriati	7	2
... Pyrococcus abyssi	1	1	Pyrococcus abyssi hits
... Thermoplasma acidophilum DSM 1728	6	1	Thermoplasma acidophilum DSM 1728 hits
.. Bacteria	24	6
... Pseudomonadati	12	4
.... Gammaproteobacteria	5	2
..... Escherichia coli	1	1	Escherichia coli hits
..... Vibrio cholerae O1 biovar El Tor str. N16961	4	1	Vibrio cholerae O1 biovar El Tor str. N16961 hits
.... Porphyromonas gingivalis	1	1	Porphyromonas gingivalis hits
.... Helicobacter pylori 26695	6	1	Helicobacter pylori 26695 hits
... Bacilli	12	2
.... Enterococcus faecalis	10	1	Enterococcus faecalis hits
.... Staphylococcus aureus subsp. aureus USA300_TCH1516	2	1	Staphylococcus aureus subsp. aureus USA300_TCH1516 hits
. synthetic construct	1	1	synthetic construct hits
. Viruses	67	5
.. Caudoviricetes	63	4
... Brujitavirus brujita	1	1	Brujitavirus brujita hits
... Peduoviridae	10	2
.... Peduovirus P2	6	1	Peduovirus P2 hits
.... Hpunavirus HP1	4	1	Hpunavirus HP1 hits
... Punavirus P1	52	1	Punavirus P1 hits
.. Sulfolobus spindle-shaped virus 1	4	1	Sulfolobus spindle-shaped virus 1 hits

Notice

Important update

Filter Results

Run PSI-Blast iteration 2

Distribution of the top 31 Blast Hits on 31 subject sequences

Notice

Important update

Filter Results

Run PSI-Blast iteration 2

Sequences producing significant alignments