🧬 Pairwise Sequence Alignment Tool
DNA Sequences
Protein Sequences
Global (Needleman-Wunsch)
Local (Smith-Waterman)
Input Sequences
Sequence 1:
ACGTACGTACGT
Sequence 2:
ACGTACCGTACGT
Alignment Parameters
Match Score:
Mismatch Score:
Substitution Matrix:
Upload Matrix File (or .zip):
Gap Opening Penalty:
Gap Extension Penalty:
Apply end gap penalties
🔬 Perform Alignment
🗑️ Clear Sequences
Alignment Results