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• 16:31, 19 March 2024 WikiSysop talk contribs created page Denovo exercise (Created page with "<H2>Overview</H2> First: <OL> <LI>Navigate to your home directory: <LI>Create a directory called "denovo" <LI>Navigate to the directory you just created. </OL> <p>In this exercise we will try to perform de novo assembly of Illumina paired-end reads. The data is from a <i>Vibrio cholerae</i> strain isolated in Nepal. You will try to: <OL> <LI>Run FastQC, adaptor and quality trimming reads (Optional - repeat of analysis you have already done in data pre-processing)...")