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• 16:29, 19 March 2024 WikiSysop talk contribs created page Postprocess exercise (Created page with "<H2>Overview</H2> First: <OL> <LI>Navigate to your home directory: <LI>Create a directory called "postalign" <LI>Navigate to the directory you just created. </OL> In this exercise, we will pre-process bam-files so they are ready for SNP calling. This is necessary to reduce the high number of potential false SNPs that will get called. You will try to: <OL> <LI>Mark read duplicates from the BAM-files <LI>Merge BAM files </OL> <H2>Duplicate removal</H2> <p>We are...")