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17 December 2024
16 December 2024
15 December 2024
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N 16:28 | SNP calling exercise part 2 answers 2 changes history +1,960 [Gabre (2×)] | |||
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16:28 (cur | prev) −5,305 Gabre talk contribs | ||||
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16:28 (cur | prev) +7,265 Gabre talk contribs (Created page with "'''Q1''' First, running: <pre> tabix -f -p vcf NA24694.gvcf.gz </pre> then <pre> gatk --java-options "-Xmx10g" HaplotypeCaller -R /home/databases/references/human/GRCh38_full_analysis_set_plus_decoy_hla.fa -I /home/projects/22126_NGS/exercises/snp_calling/NA24694.bam -L chr20 -O NA24694.gvcf.gz --dbsnp /home/databases/databases/GRCh38/Homo_sapiens_assembly38.dbsnp138.vcf.gz -ERC GVCF </pre> <pre> gatk GenotypeGVCFs -R /home/databases/references/human/GRCh3...") | |||
| N 16:27 | SNP calling exercise part 1 answers diffhist +3,647 Gabre talk contribs (Created page with "'''Q1''' First, running: <pre> tabix -f -p vcf NA24694.gvcf.gz </pre> then <pre> gatk --java-options "-Xmx10g" HaplotypeCaller -R /home/databases/references/human/GRCh38_full_analysis_set_plus_decoy_hla.fa -I /home/projects/22126_NGS/exercises/snp_calling/NA24694.bam -L chr20 -O NA24694.gvcf.gz --dbsnp /home/databases/databases/GRCh38/Homo_sapiens_assembly38.dbsnp138.vcf.gz -ERC GVCF </pre> <pre> gatk GenotypeGVCFs -R /home/databases/references/human/GRCh3...") | ||||
| 16:27 | SNP calling exercise part 1 diffhist +50 Gabre talk contribs | ||||
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16:27 | SNP calling exercise part 2 2 changes history +118 [Gabre (2×)] | |||
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16:27 (cur | prev) +2 Gabre talk contribs | ||||
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16:25 (cur | prev) +116 Gabre talk contribs | ||||
10 December 2024
| N 17:20 | Unix pipes diffhist +35,163 Gabre talk contribs (Created page with "Welcome! This small guide contains a lot of information and examples that will help you as you start learning Linux. In addition to simple Linux commands, this tutorial also provides three Python scripts, that you can run and try out the concepts yourself. # Basic Unix Commands and Concepts This is where your journey begins! If you are new to Unix-based systems and also got used to Windows or MacOS, you really need a brief explanation of a few key commands and concept...") | ||||