Program 2024 - Revision history

https://teaching.healthtech.dtu.dk/22126/index.php?action=history&feed=atom&title=Program_2024 Program 2024 - Revision history 2026-04-27T13:58:10Z Revision history for this page on the wiki MediaWiki 1.41.0 https://teaching.healthtech.dtu.dk/22126/index.php?title=Program_2024&diff=14&oldid=prev WikiSysop: /* Course Program - January 2024 */ 2024-03-19T15:21:17Z

<p><span dir="auto"><span class="autocomment">Course Program - January 2024</span></span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 17:21, 19 March 2024</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l61">Line 61:</td> <td colspan="2" class="diff-lineno">Line 61:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>([https://teaching.healthtech.dtu.dk/22113/index.php/Unix Video lectures to watch from "Unix intro.." to "Touching upon..."]) </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>([https://teaching.healthtech.dtu.dk/22113/index.php/Unix Video lectures to watch from "Unix intro.." to "Touching upon..."]) </div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>([https://teaching.healthtech.dtu.dk/22113/index.php/Unix Exercises] possible answers [[Unix_answers|here]]) </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>([https://teaching.healthtech.dtu.dk/22113/index.php/Unix Exercises] possible answers [[Unix_answers|here]]) </div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>([<del style="font-weight: bold; text-decoration: none;">http</del>://teaching.healthtech.dtu.dk/material/<del style="font-weight: bold; text-decoration: none;">36610</del>/UnixInstructions36610.pdf Unix Notes])</DD></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>([<ins style="font-weight: bold; text-decoration: none;">https</ins>://teaching.healthtech.dtu.dk/material/<ins style="font-weight: bold; text-decoration: none;">22126</ins>/UnixInstructions36610.pdf Unix Notes])</DD></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><DD>Peter Wad Sackett, Astrid Brix Saksager, Grigorii Nos </DD></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><DD>Peter Wad Sackett, Astrid Brix Saksager, Grigorii Nos </DD></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l71">Line 71:</td> <td colspan="2" class="diff-lineno">Line 71:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>([https://teaching.healthtech.dtu.dk/22113/index.php/Unix Video lectures to watch from "Unix intro.." to "Touching upon..."]) </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>([https://teaching.healthtech.dtu.dk/22113/index.php/Unix Video lectures to watch from "Unix intro.." to "Touching upon..."]) </div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>([https://teaching.healthtech.dtu.dk/22113/index.php/Unix Exercises] possible answers [[Unix_answers|here]])</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>([https://teaching.healthtech.dtu.dk/22113/index.php/Unix Exercises] possible answers [[Unix_answers|here]])</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>([<del style="font-weight: bold; text-decoration: none;">http</del>://teaching.healthtech.dtu.dk/material/<del style="font-weight: bold; text-decoration: none;">36610</del>/UnixInstructions36610.pdf Unix Notes])</DD></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>([<ins style="font-weight: bold; text-decoration: none;">https</ins>://teaching.healthtech.dtu.dk/material/<ins style="font-weight: bold; text-decoration: none;">22126</ins>/UnixInstructions36610.pdf Unix Notes])</DD></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><DD>Peter Wad Sackett, Astrid Brix Saksager, Grigorii Nos </DD></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><DD>Peter Wad Sackett, Astrid Brix Saksager, Grigorii Nos </DD></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> </table>

WikiSysop https://teaching.healthtech.dtu.dk/22126/index.php?title=Program_2024&diff=10&oldid=prev WikiSysop: Created page with " '''REMEMBER TO BRING A LAPTOP FOR EXERCISES''' Lectures will be in person in building [https://goo.gl/maps/k4wYkMjTJ2HLHuyN8 303A] in auditorium 44. Offline discussions will take place on Discord (https://discord.gg/7PKuKhKYQJ). Please register with your '''full name'''. Will use Discord for online classes and collaboration with your project partners. <!-- Lectures and exercises will take place on Discord (https://discord.gg/FBb2edFW). Please register with your ful..." 2024-03-19T14:59:48Z

<p>Created page with " '''REMEMBER TO BRING A LAPTOP FOR EXERCISES''' Lectures will be in person in building [https://goo.gl/maps/k4wYkMjTJ2HLHuyN8 303A] in auditorium 44. Offline discussions will take place on Discord (https://discord.gg/7PKuKhKYQJ). Please register with your '''full name'''. Will use Discord for online classes and collaboration with your project partners. <br /> <br /> The course has two main parts, the first half is lectures and exercises and the last half is project work ending with the exam on '''Friday 19th of January 2024'''. <br /> <br /> <br /> <br /> <br /> <br /> === Course Program - January 2024 ===<br /> <br /> <br /> <HR><br /> '''Tuesday, January 2'''<br /> <HR><br /> ''Introduction - Next Generation Sequencing''<br /> <DL><br /> <DT>9:00am-9:30am</DT> <br /> <DD>Introduction to course <br /> ([https://teaching.healthtech.dtu.dk/material/22126/2024/11_Introduction_to_course_GR.pdf Lecture slides])<br /> </DD><br /> <DD>Gabriel Renaud</DD><br /> <br /> <DT>9:30am-10:00am</DT><br /> <dd>Introduction to NGS <br /> ([https://teaching.healthtech.dtu.dk/material/22126/2024/12_Introduction_to_NGS_GR.pdf Lecture slides]) </DD><br /> <DD>Gabriel Renaud</DD><br /> <br /> <DT>10:00am-10:45am</DT><br /> <DD>2nd and 3rd generation NGS Technologies <br /> ([https://teaching.healthtech.dtu.dk/material/22126/2024/13_Introduction_to_NGS_technology_GR.pdf Lecture slides])</DD><br /> <DD>Gabriel Renaud</DD><br /> <br /> <DT>10:45am-11:00am</DT><br /> <DD>''Break''</DD><br /> <br /> <DT>11:00am-12:00pm</DT><br /> <DD>Exercise: Logging on to our pupil servers ([[Logging on to pupil system]])</DD><br /> <DD>Peter Wad Sackett, Astrid Brix Saksager, Grigorii Nos, Gabriel Renaud </DD><br /> <br /> <DT>12:00pm-1:00pm</DT> <br /> <DD>''Lunch Break''</DD><br /> <br /> <DT>1:00pm-1:30pm</DT><br /> <DD>Exercise: Logging on to our pupil servers ([[Logging on to pupil system]])</DD><br /> <DD>Peter Wad Sackett, Astrid Brix Saksager, Grigorii Nos, Gabriel Renaud </DD><br /> <br /> <DT>1:30pm-2:15pm </DT><br /> <DD>Introduction to UNIX <br /> ([https://teaching.healthtech.dtu.dk/22113/index.php/Unix Video lectures to watch from "Unix intro.." to "Touching upon..."]) <br /> ([https://teaching.healthtech.dtu.dk/22113/index.php/Unix Exercises] possible answers [[Unix_answers|here]]) <br /> ([http://teaching.healthtech.dtu.dk/material/36610/UnixInstructions36610.pdf Unix Notes])</DD><br /> <DD>Peter Wad Sackett, Astrid Brix Saksager, Grigorii Nos </DD><br /> <br /> <DT>2:15pm-2:30pm</DT><br /> <DD>''Break''</DD><br /> <br /> <DT>2:30pm-3:30pm </DT><br /> <DD>Introduction to UNIX (continued)<br /> ([https://teaching.healthtech.dtu.dk/22113/index.php/Unix Video lectures to watch from "Unix intro.." to "Touching upon..."]) <br /> ([https://teaching.healthtech.dtu.dk/22113/index.php/Unix Exercises] possible answers [[Unix_answers|here]])<br /> ([http://teaching.healthtech.dtu.dk/material/36610/UnixInstructions36610.pdf Unix Notes])</DD><br /> <DD>Peter Wad Sackett, Astrid Brix Saksager, Grigorii Nos </DD><br /> <br /> <DT>3:30pm-4:00pm </DT><br /> <DD>First look at data<br /> ([[First look exercise]])<br /> <DD>Peter Wad Sackett, Astrid Brix Saksager, Grigorii Nos </DD><br /> <br /> <DT>3:30pm-4:00pm </DT><br /> <DD>If you are done, some UNIX with zip codes<br /> ([[Zip codes]])<br /> <DD>Peter Wad Sackett, Astrid Brix Saksager, Grigorii Nos </DD><br /> </DL><br /> <br /> <BR><br /> <br /> <HR><br /> '''Wednesday, January 3'''<br /> <HR><br /> ''Data pre-processing & Alignment''<br /> <br /> <DL><br /> <DT>9:00am-10:45am </DT><br /> <DD>Data basics ([https://teaching.healthtech.dtu.dk/material/22126/2024/21_Data_Basics_GR.pdf Lecture slides]) ([[Data basics exercise]]) ([[Data basics exercise answers]])</DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos </DD><br /> <br /> <br /> <DT>10:45am-11:00am</DT><br /> <DD>''Break''</DD><br /> <br /> <DT>11:00am-12:00pm </DT><br /> <DD>Data pre-processing ([https://teaching.healthtech.dtu.dk/material/22126/2024/22_Data_Preprocessing_GR.pdf Lecture slides]) ([[Data Preprocess exercise]]) ([[Data Preprocess exercise answers]])</DD><br /> <DD>Gabriel Renaud </DD><br /> <br /> <DT>12:00pm-1:00pm </DT><br /> <DD>''Lunch Break'' </DD><br /> <br /> <br /> <DT>1:00pm-2:15pm</DT><br /> <DD>Alignment ([https://teaching.healthtech.dtu.dk/material/22126/2024/23_Alignment_GR.pdf Lecture slides]) </DD><br /> <DD>Gabriel Renaud </DD><br /> <br /> <DT>2:15pm-2:30pm</DT><br /> <DD>''Break'' </DD><br /> <br /> <br /> <DT>2:30pm-2:45pm</DT><br /> <DD>Brief reminder on probabilities and Bayesian theory ([https://teaching.healthtech.dtu.dk/material/22126/2024/24_Bayesian_reminder_GR.pdf Lecture slides]) </DD><br /> <DD>Gabriel Renaud</DD><br /> <br /> <DT>2:45pm-4:00pm</DT><br /> <DD>Exercise: Alignment ([[Alignment exercise]]) ([[Alignment exercise answers]])</DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos</DD><br /> <DL><br /> <br /> <BR><br /> <br /> <HR><br /> '''Thursday, January 4'''<br /> <HR><br /> <br /> ''Alignment & Genotyping & de novo assembly''<br /> <DL><br /> <DT>9:00am-9:30am</DT><br /> <DD>Functional Human Variation</DD><br /> <DD>Gabriel Renaud, ([https://teaching.healthtech.dtu.dk/material/22126/2024/41_Functional_Human_Variation_GR.pdf Lecture slides])</DD><br /> <br /> <DT>9:30am-10:15am</DT><br /> <DD>Alignment postprocessing & variant calling ([https://teaching.healthtech.dtu.dk/material/22126/2024/42_post_alignment_variantcalling_GR.pdf Lecture slides])</DD><br /> <br /> <DD>Gabriel Renaud</DD><br /> <br /> <DT>10:15am-10:30am</DT><br /> <DD>''Break''</DD><br /> <br /> <DT>10:30am-12:00pm</DT><br /> <DD>Exercise: Postprocessing & variant calling ([[Postprocess exercise]]) ([[Postprocess_exercise_answers]]) ([[SNP calling exercise]]) ([[SNP_calling_exercise_answers]])</DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos</DD><br /> <br /> <br /> <DT>12:00pm-1:00pm </DT><br /> <DD>''Lunch Break'' </DD><br /> <br /> <br /> <DT>1:00pm-1:45pm </DT><br /> <DD>Lecture: de novo assembly ([https://teaching.healthtech.dtu.dk/material/22126/2024/43_de_novo_assembly_course_GR.pdf Lecture slides])([http://teaching.healthtech.dtu.dk/material/22126/debruijn_handout.pdf Handout]) </DD><br /> <DD>Gabriel Renaud</DD><br /> <br /> <DT>1:45pm-2:00pm</DT><br /> <DD>''Break''</DD><br /> <br /> <DT>2:00pm-4:00pm</DT><br /> <DD>Exercise: de novo assembly ([[denovo exercise]]) ([[denovo solution]]) </DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos</DD><br /> </DL><br /> <br /> <BR><br /> <br /> <HR><br /> '''Friday, January 5'''<br /> <HR><br /> ''Ancient DNA and RNAseq''<br /> <br /> <DL><br /> <br /> <DT>9:00am-10:00pm</DT><br /> <DD>Ancient DNA ([https://teaching.healthtech.dtu.dk/material/22126/2024/dtu_adna_2024.pdf Lecture slides])</DD><br /> <DD>Martin Sikora</DD><br /> <br /> <DT>10:00pm-10:15pm</DT><br /> <DD>''Break''</DD><br /> <br /> <DT>10:15pm-12:00pm</DT><br /> <DD>Exercise: Ancient DNA ([[Ancient DNA exercise]]) ([[Ancient_DNA_exercise_answers]])</DD><br /> <DD>Martin Sikora, Astrid Brix Saksager, Grigorii Nos</DD><br /> <br /> <br /> <br /> <DT>12:00pm-1:00pm </DT><br /> <DD>''Lunch Break'' </DD><br /> <br /> <DT>1:00pm-1:45pm</DT><br /> <DD>Lecture: RNAseq ([https://teaching.healthtech.dtu.dk/material/22126/2024/ngs_transcriptomics_kvs_2023_without_solutions_v2.pdf Lecture slides]) ([https://teaching.healthtech.dtu.dk/material/22126/2024/ngs_transcriptomics_kvs_2023_with_solutions_v2.pdf Lecture slides with solutions])</DD><br /> <DD>Kristoffer Vitting-Seerup</DD><br /> <br /> <DT>1:45pm-2:00pm</DT><br /> <DD>''Break''</DD><br /> <br /> <DT>2:00pm-4:00pm</DT><br /> <DD>Exercise: RNAseq ([[Rnaseq_exercise]]) ([[Rnaseq_exercise_answers]]) </DD><br /> <DD>Kristoffer Vitting-Seerup, Astrid Brix Saksager, Grigorii Nos </DD><br /> <br /> <BR><br /> <br /> <BR><br /> <br /> <HR><br /> '''Saturday, January 6'''<br /> <HR><br /> ''Reading at home''<br /> <BR><br /> <br /> <HR><br /> '''Monday, January 8'''<br /> <HR><br /> ''Long read tech and recap test''<br /> <DL><br /> <DT>9:00am-9:45am </DT><br /> <DD>Lecture: Long read sequencing ([https://teaching.healthtech.dtu.dk/material/22126/2024/Long_read_sequencing_Lecture_08-01-2023.pdf Lecture slides])</DD><br /> <DD>Frederikke Pedersen</DD><br /> <br /> <DT>9:45am-10:00am</DT><br /> <DD>''Break''</DD><br /> <br /> <DT>10:00am-12:00am</DT><br /> <DD>Exercise: Long read technology ([[longread exercise]])([[longread_exercise_answers]])</DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos</DD><br /> <br /> <DT>12:00pm-1:00pm </DT><br /> <DD>''Lunch Break'' </DD><br /> <br /> <br /> <DT>1:00pm-1:45pm</DT><br /> <DD>Brief presentation on annotation & Recap Test ([https://teaching.healthtech.dtu.dk/material/22126/2024/test_2024.pdf Test 2024])([https://teaching.healthtech.dtu.dk/material/22126/2024/test_2024_withA.pdf answers])</DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos </DD><br /> <br /> <DT>1:45pm-2:00pm</DT><br /> <DD>''Break''</DD><br /> <br /> <DT>2:00pm-4:00pm</DT><br /> <DD>Time to work on this week's exercises</DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos</DD><br /> </DL><br /> <br /> <BR><br /> <br /> <br /> <HR><br /> '''Tuesday, January 9'''<br /> <HR><br /> <br /> <br /> <HR><br /> ''Metagenomics''<br /> <DL><br /> <DT>9:00am-9:45am </DT><br /> <DD>Metagenomics & Binning ([https://teaching.healthtech.dtu.dk/material/22126/2024/Metagenomics_binning.pdf Lecture slides])</DD><br /> <DD>Trine Zachariasen</DD><br /> <br /> <DT>9:45am-10:00am</DT><br /> <DD>''Break''</DD><br /> <br /> <DT>10:00am-12:00pm</DT><br /> <DD>Exercise: Kaiju: Taxonomic classification ([[Kaiju exercise]]) ([[Kaiju solution]]) </DD><br /> <DD>Trine Zachariasen, Cecilie Thystrup, Astrid Brix Saksager</DD><br /> <br /> <br /> <br /> <br /> <DT>1:00pm-1:45pm</DT><br /> <DD>Lecture: Quantitative Metagenomics ([https://teaching.healthtech.dtu.dk/material/22126/2024/Quantitative_metagenomics.pdf Lecture slides])</DD><br /> <DD>Trine Zachariasen</DD><br /> <br /> <DT>1:45pm-2:00pm</DT><br /> <DD>''Break''</DD><br /> <br /> <DT>2:00pm-4:00pm</DT><br /> <DD>Exercise: Quantitative Metagenomics ([[QuantitativeMetagenomics]]) ([[QuantitativeMetagenomicsSolution]]) </DD><br /> <DD>Trine Zachariasen, Cecilie Thystrup, Astrid Brix Saksager</DD><br /> </DL><br /> <br /> <BR><br /> <br /> <HR><br /> '''Wednesday, January 10'''<br /> <HR><br /> <br /> ''Genomic Epidemiology and project group''<br /> <br /> <DL><br /> <DT>9:00am-9:55am</DT><br /> <DD>Case story: Genomic Epidemiology ([https://teaching.healthtech.dtu.dk/material/22126/2024/Genomic_epidemiology_NGScourse_Jan2024.pdf Lecture])</DD><br /> <DD>Pimlapas Leekitecharoenphon (Shinny)</DD><br /> <br /> <DT>9:55am-10:10am</DT><br /> <DD>''Break''</DD><br /> <br /> <DT>10:10am-12:00pm</DT> <br /> <DD>Exercise: Genomic Epidemiology ([[Genomic epidemiology exercise]]) ([[Genomic epidemiology solution]])</DD><br /> <DD>Gabriel Renaud</DD><br /> <br /> <DT>12:00pm-1:00pm </DT><br /> <DD>''Lunch Break'' </DD><br /> <br /> <br /> <DT>1:00pm-1:45pm </DT> <br /> <DD>Projects & Group formation ([https://teaching.healthtech.dtu.dk/material/22126/2024/82_Projects_GR.pdf Lecture slides] [http://teaching.healthtech.dtu.dk/material/22126/2024/posters.tar.gz Examples from previous courses]) </DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos</DD><br /> <br /> <DT>1:45pm-4:00pm </DT> <br /> <DD>Projects & Group formation, prepare an outline for tomorrow. please write group names in the [https://docs.google.com/document/d/1WTclnPWBoS1JvZ2C1qoshooQhuVEogVg3ZHGKaQt0l0/edit?usp=sharing document for 2024]</DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos</DD><br /> </DL><br /> <br /> </DL><br /> <br /> <BR><br /> <br /> <HR><br /> '''Thursday, January 11'''<br /> <HR><br /> ''CancerSeq & Project work''<br /> <br /> <DT>9:00am-9:45am </DT><br /> <DD>Lecture: Cancer-seq ([https://teaching.healthtech.dtu.dk/material/22126/2024/Cancer_Genomics_EP_2024.pdf Lecture slides]) </DD> <br /> <DD>Elena Papaleo </DD><br /> <br /> <DT>10:00am-12:00pm</DT><br /> <DD>Exercise: Cancer-seq ([[Cancerseq_exercise]]) ([[Cancerseq_exercise_answers]])</DD><br /> <DD>Matteo Arnaudi, Astrid Brix Saksager, Grigorii Nos </DD><br /> </DL><br /> <br /> <DT>12:00pm-1:00pm </DT><br /> <DD>''Lunch Break'' </DD><br /> <br /> <br /> <DT>1:00pm-4:00pm </DT><br /> <DD>Project consulation</DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos </DD><br /> <br /> <br /> <BR><br /> <br /> <HR><br /> '''Friday, January 12'''<br /> <HR><br /> ''Project presentation''<br /> <DL><br /> <DT>9:00am-12:00pm</DT> <br /> <DD>Project work</DD><br /> <br /> <DD></DD><br /> <br /> <DT>12:00pm-1:00pm </DT><br /> <DD>''Lunch Break''</DD><br /> <br /> <DT>1:00pm-4:00pm </DT><br /> <DD>Project work</DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos</DD><br /> </DL><br /> <br /> <BR><br /> <br /> '''Monday, January 15'''<br /> <HR><br /> ''Project work''<br /> <DL><br /> <DT>9:00am-4:00pm</DT><br /> <DD>Project work</DD><br /> <br /> <DT>1:00pm-3:00pm</DT><br /> <DD>Project work/Office hours</DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos</DD><br /> </DL><br /> <br /> <BR><br /> <br /> '''Tuesday, January 16'''<br /> <HR><br /> ''Project work''<br /> <DL><br /> <DT>9:00am-4:00pm</DT><br /> <DD>Project work</DD><br /> <br /> <DT>1:00pm-3:00pm</DT><br /> <DD>Project work/Office hours</DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos</DD><br /> </DL><br /> <br /> <BR><br /> <br /> '''Wednesday, January 17'''<br /> <HR><br /> ''Project work''<br /> <DL><br /> <DT>9:00am-4:00pm</DT><br /> <DD>Project work</DD><br /> <br /> <DT>1:00pm-3:00pm</DT><br /> <DD>Project work/Office hours</DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos</DD><br /> </DL><br /> <br /> <BR><br /> <br /> '''Thursday, January 18'''<br /> <HR><br /> ''Project work''<br /> <DL><br /> <DT>9:00am-4:00pm</DT><br /> <DD>Project work</DD><br /> <br /> <DT>1:00pm-3:00pm</DT><br /> <DD>Project work/Office hours</DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos</DD><br /> </DL><br /> <br /> <BR><br /> <br /> '''Thursday, January 18'''<br /> <br /> <HR><br /> ''Project Work & Produce 1 page report''<br /> <DL><br /> <br /> <br /> <DT>10:00am-12:00pm</DT><br /> <DD>Q&A: Practical information about the exam</DD><br /> <DD>Project work/Office hours</DD><br /> <DD>Gabriel Renaud, Astrid Brix Saksager, Grigorii Nos</DD><br /> </DL><br /> <br /> <BR><br /> <br /> '''Friday, January 19'''<br /> <HR><br /> ''Exam''<br /> <DL><br /> <DT>9:00am-4:00pm</DT><br /> <DD>Written Exam</DD><br /> </DL></div>

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