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A user with 336 edits. Account created on 4 August 2025.
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27 January 2026

  • 10:1310:13, 27 January 2026 diff hist 0‎ m Programme ‎No edit summary
  • 10:1310:13, 27 January 2026 diff hist 0‎ m Programme ‎No edit summary
  • 10:1210:12, 27 January 2026 diff hist +3,538‎ N Example code - Functions ‎ Created page with "__NOTOC__ == File used in example == [http://teaching.healthtech.dtu.dk/material/22118/aln7.fsa aln7.fsa] == Finding consensus sequence from protein alignment == This simple consensus sequence finder simply looks at each position on all the sequences in an alignment and picks the most frequent occurring amino acid as the consensus for that position. In case of tie, the first one according to the sorting algorithm is chosen. Stupid and random, but a good practical example..." current
  • 10:1110:11, 27 January 2026 diff hist +4,358‎ N Functions, namespace, memory management ‎ Created page with "__NOTOC__ {| width=500 style="font-size: 10px; float:right; margin-left: 10px; margin-top: -56px;" |Previous: More git |Next: Comprehension, iteration, generators |} == Required course material for the lesson == Powerpoint: [https://teaching.healthtech.dtu.dk/material/22118/22118_05-Functions.ppt Functions] - this will be short as it is a reminder.<br> Powerpoint: [https://teaching.healthtech.dtu.dk/material/22118/22118_05-Namespace.ppt Namespace].<br> Powerpoin..."
  • 10:0410:04, 27 January 2026 diff hist +2,873‎ N Collection of files ‎ Created page with "__NOTOC__ Last updated: February 2, 2023 == Files used in various exercises == To download the files to your system, just press the Shift key while you left click on the blue link. Follow the instructions.<br> You can play around with these files as much as you like. If you change or destroy them, just download them again.<br> Put the files in your course folder on your computer.<br> <!-- The files have been zipped together in one convenient download for you.<br> [https:..."

26 January 2026

7 November 2025

6 November 2025

29 October 2025

17 October 2025

26 September 2025

  • 14:4214:42, 26 September 2025 diff hist −9‎ m 22118/22168 Advanced Unix & Python for Bioinformaticians ‎ →‎Resources
  • 14:4114:41, 26 September 2025 diff hist 0‎ m 22118/22168 Advanced Unix & Python for Bioinformaticians ‎ →‎Resources
  • 14:3414:34, 26 September 2025 diff hist 0‎ N File:DNA.jpg ‎No edit summary current
  • 14:3314:33, 26 September 2025 diff hist +4,874‎ N Biological knowledge needed in the course ‎ Created page with "__NOTOC__ == Genetic information == The genetic information is stored in the DNA double helix strand, check [https://en.wikipedia.org/wiki/DNA Wikipeida on DNA]. A strand consists of a sequence of the 4 nucleotides (bases); Adenine (A), Thymine (T), Cytosine (C) and Guanine (G). A gene is a sequence of the 4 different nucleotides, where subsequent triplets of nucleotides (a codon) is translated into a sequence of amino acids, which then forms the proteins of our body. A..." current
  • 14:3214:32, 26 September 2025 diff hist +2,596‎ N Shortest path in graph ‎ Created page with "__NOTOC__ === Description === The program is given as input a file containing connected nodes in a graph and a weight assigned to the edge between the nodes. The program shall answer the questions: Is there a path between two given nodes in the graph? If so, what is the shortest path ?<br> This is useful in a number of situations: Protein interaction, which proteins interact together, thereby discovering f.ex. new pathways. Social networks, who knows who, proving the "si..." current
  • 14:3114:31, 26 September 2025 diff hist +1,846‎ N Positive proteins ‎ Created page with "__NOTOC__ === Description === Find the top 1000 most positively charged protein sequences in uniprot and put them in a fasta file. Repeat the search but this time find the most positively charged protein sequences per molecular weight of the sequence and put that into another fasta file. Among the 20 common amino acids, five have a side chain which can be charged. At pH=7, two are negative charged: aspartic acid (D) and glutamic acid (E) (acidic side chains), and three a..." current
  • 14:3014:30, 26 September 2025 diff hist +1,614‎ N Spider toxins ‎ Created page with "__NOTOC__ === Description === Find all spider toxins in uniprot and output them in a fasta file. Who knows when it will be useful to produce venom? === Input/output === Download the entire [https://teaching.healthtech.dtu.dk/material/22118/uniprot_sprot.dat.gz swissprot database]. This will be your input file to your program.<br> Unpack it yourself with gunzip uniprot_sprot.dat.gz or whatever method you prefer. Careful, it will take up 3 GB.<br> Notice there are many s..." current
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