22111:Course plan autumn 2026 - Revision history

Henni: /* Tuesday Sep 1 — Introduction, taxonomy, and GenBank */

2026-08-31T15:04:25Z

Tuesday Sep 1 — Introduction, taxonomy, and GenBank

← Older revision		Revision as of 17:04, 31 August 2026
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	=== Tuesday Sep 1 — Introduction, taxonomy, and GenBank ===		=== Tuesday Sep 1 — Introduction, taxonomy, and GenBank ===
	:'''Lectures:'''		:'''Lectures:'''
	:* ''Introduction to the course, bioinformatics~~, and computers~~'' — Henrik Nielsen.		:* ''Introduction to the course and bioinformatics'' — Henrik Nielsen.
	:* ''Test of prior knowledge'' — a Vevox session.		:* ''Test of prior knowledge'' — a Vevox session.
	:* ''~~Evolution,~~ Taxonomy and DNA ~~as Biological Information~~'' — Rasmus Wernersson.		:* ''Reference databases: Taxonomy and DNA sequences'' — Rasmus Wernersson.
	:'''Slides:''' will be made available on DTU Learn.		:'''Slides:''' will be made available on DTU Learn.
	:'''Curriculum:''' [https://teaching.healthtech.dtu.dk/material/22111/PDF/Chapter2_Evolution.pdf Brief Introduction to Evolutionary Theory] — Written by Anders Gorm Pedersen.		:'''Curriculum:''' [https://teaching.healthtech.dtu.dk/material/22111/PDF/Chapter2_Evolution.pdf Brief Introduction to Evolutionary Theory] — Written by Anders Gorm Pedersen.

Henni: /* Tuesday Sep 1 — Introduction, taxonomy, and GenBank */

2026-08-31T13:34:23Z

Tuesday Sep 1 — Introduction, taxonomy, and GenBank

← Older revision		Revision as of 15:34, 31 August 2026
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	:# [[Using the Taxonomy database]]		:# [[Using the Taxonomy database]]
	:# [[ExGenbank-new\|Using the GenBank database]]		:# [[ExGenbank-new\|Using the GenBank database]]
			:'''Reference material''' for the exercise: [https://teaching.healthtech.dtu.dk/material/22111/GenBank+FASTA_handout_revised.pdf GenBank + FASTA format] [PDF]
	:'''Background material''' (supposedly known):		:'''Background material''' (supposedly known):
	:*[[File:Phone_34.gif‎]] [http://www.youtube.com/watch?v=YgmoHtLGb5c mRNA splicing] (YouTube).		:*[[File:Phone_34.gif‎]] [http://www.youtube.com/watch?v=YgmoHtLGb5c mRNA splicing] (YouTube).

Henni: /* Hand-ins */

2026-08-27T08:41:30Z

Hand-ins

← Older revision		Revision as of 10:41, 27 August 2026
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	'''Please do ''not'' copy the questions''' from the exercise guide to your logbook. The hand-in module on DTU Learn has a system for plagiarism detection, which will raise an alarm if significant portions of your hand-in are identical to documents found on the internet — and that includes the exercise guides.		'''Please do ''not'' copy the questions''' from the exercise guide to your logbook. The hand-in module on DTU Learn has a system for plagiarism detection, which will raise an alarm if significant portions of your hand-in are identical to documents found on the internet — and that includes the exercise guides.

	In case you don't finish the exercises Tuesday afternoon, there is still a chance to hand in — the deadline for handing in at Learn is '''Thursday at 13:00''' each week. The '''answers to the exercises''' will become visible ~~at the same moment (Thursday at 13:00)~~. You should read the answers carefully and compare with your own answers.		In case you don't finish the exercises Tuesday afternoon, there is still a chance to hand in — the deadline for handing in at Learn is '''Thursday at 13:00''' each week. The '''answers to the exercises''' will become visible when you have uploaded your hand-in. You should read the answers carefully and compare with your own answers.

	We do not offer individual feedback on the hand-ins, but we will give a collective feedback before the lecture the next Tuesday, where we address any common mistakes there may have been.		We do not offer individual feedback on the hand-ins, but we will give a collective feedback before the lecture the next Tuesday, where we address any common mistakes there may have been.

Henni: /* Teaching assistants */

2026-08-27T07:27:39Z

Teaching assistants

← Older revision		Revision as of 09:27, 27 August 2026
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	* [https://www.dtu.dk/person/melanie-randahl-nielsen?id=118686&entity=profile Melanie Randahl Nielsen] — PhD student		* [https://www.dtu.dk/person/melanie-randahl-nielsen?id=118686&entity=profile Melanie Randahl Nielsen] — PhD student
	* [https://www.dtu.dk/person/pilar-ballesteros-cuartero?id=224218&entity=profile Pilar Ballesteros Cuartero] — PhD student		* [https://www.dtu.dk/person/pilar-ballesteros-cuartero?id=224218&entity=profile Pilar Ballesteros Cuartero] — PhD student
	* [https://www.dtu.dk/person/mads-vodder-hartmann?id=137701&entity=profile Mads Vodder Hartmann] — PhD student, stand-in for Melanie in ~~weeks 1+~~2		* [https://www.dtu.dk/person/johanne-badsberg-overgaard?id=147205&entity=profile Johanne Badsberg Overgaard] — PhD student, stand-in for Melanie in week 1
			* [https://www.dtu.dk/person/mads-vodder-hartmann?id=137701&entity=profile Mads Vodder Hartmann] — PhD student, stand-in for Melanie in week 2
	<!--		<!--
	* [https://www.dtu.dk/person/david-lokjaer-faurdal?id=98246&entity=profile David Lokjær Faurdal] — PhD student		* [https://www.dtu.dk/person/david-lokjaer-faurdal?id=98246&entity=profile David Lokjær Faurdal] — PhD student

Henni: /* Where and when */

2026-08-20T09:44:54Z

Where and when

← Older revision		Revision as of 11:44, 20 August 2026
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	Lectures plus subsequent exercises will take place every Tuesday afternoon during the semester, starting '''Tuesday Sep 1 at 13:00'''.		Lectures plus subsequent exercises will take place every Tuesday afternoon during the semester, starting '''Tuesday Sep 1 at 13:00'''.

	Lectures will be from 13:00 to approx. 14 in '''~~TBA<!--~~Aud. 54, building 208~~-->~~''', and the exercises will then take place in '''~~TBA<!--~~the group rooms ALC1 (001), ALC2 (011), ALC4 (012), and "Touch Down" (024) also in building 208~~-->~~'''.		Lectures will be from 13:00 to approx. 14 in '''Aud. 53, building 208''', and the exercises will then take place in '''the group rooms ALC1 (001), ALC2 (011), ALC4 (012), and "Touch Down" (024) also in building 208'''.

	=== Teachers ===		=== Teachers ===

Henni: /* Tuesday Dec 15 */

2026-08-17T17:48:02Z

Tuesday Dec 15

← Older revision		Revision as of 19:48, 17 August 2026
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	'''Winter exam 2025:''' Go to https://eksamen.dtu.dk/ and find 22111.		'''Winter exam 2025:''' Go to https://eksamen.dtu.dk/ and find 22111.

	~~<!--~~		Here you can find a guide to the Digital Exam interface (in Danish and English): https://student.dtu.dk/en/exam/exam-guides
	~~[https://teaching.healthtech.dtu.dk/material/22111/Vejledning-til-digital-eksamen-DE-DK-ENG-revideret-2023-.pdf~~ Here is a guide] to the Digital Exam interface (in Danish and English).
	~~-->~~
	The assignment will be accessible from '''XX:00''' on Dec 15.		The assignment will be accessible from '''XX:00''' on Dec 15.

Henni: /* Tuesday Dec 16 */

2026-08-17T17:34:50Z

Tuesday Dec 16

← Older revision		Revision as of 19:34, 17 August 2026
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	== Exam ==		== Exam ==

	=== Tuesday Dec 16 ===		=== Tuesday Dec 15 ===
	'''Winter exam 2025:''' Go to https://eksamen.dtu.dk/ and find 22111.		'''Winter exam 2025:''' Go to https://eksamen.dtu.dk/ and find 22111.

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	[https://teaching.healthtech.dtu.dk/material/22111/Vejledning-til-digital-eksamen-DE-DK-ENG-revideret-2023-.pdf Here is a guide] to the Digital Exam interface (in Danish and English).		[https://teaching.healthtech.dtu.dk/material/22111/Vejledning-til-digital-eksamen-DE-DK-ENG-revideret-2023-.pdf Here is a guide] to the Digital Exam interface (in Danish and English).
	-->		-->
	The assignment will be accessible from '''XX:00''' on Dec 16.		The assignment will be accessible from '''XX:00''' on Dec 15.

	=== Checklist for computers ===		=== Checklist for computers ===

Henni: /* Tuesday Dec 16 */

2026-08-17T16:12:54Z

Tuesday Dec 16

← Older revision		Revision as of 18:12, 17 August 2026
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	'''Winter exam 2025:''' Go to https://eksamen.dtu.dk/ and find 22111.		'''Winter exam 2025:''' Go to https://eksamen.dtu.dk/ and find 22111.

			<!--
	[https://teaching.healthtech.dtu.dk/material/22111/Vejledning-til-digital-eksamen-DE-DK-ENG-revideret-2023-.pdf Here is a guide] to the Digital Exam interface (in Danish and English).		[https://teaching.healthtech.dtu.dk/material/22111/Vejledning-til-digital-eksamen-DE-DK-ENG-revideret-2023-.pdf Here is a guide] to the Digital Exam interface (in Danish and English).
			-->
	The assignment will be accessible from '''XX:00''' on Dec 16.		The assignment will be accessible from '''XX:00''' on Dec 16.

Henni: /* Tuesday Oct 20 — Case: Malaria vaccine */

2026-08-17T11:02:22Z

Tuesday Oct 20 — Case: Malaria vaccine

← Older revision		Revision as of 13:02, 17 August 2026
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	:'''Curriculum:''' [http://www.cdc.gov/dpdx/malaria/ Malaria — Causal Agents / Life Cycle]		:'''Curriculum:''' [http://www.cdc.gov/dpdx/malaria/ Malaria — Causal Agents / Life Cycle]
	:'''Slides:''' on DTU Learn.		:'''Slides:''' on DTU Learn.
			:[[Image:Emblem-important_tiny.png‎]] '''Mid-term evaluation:''' Go to https://evaluering.dtu.dk/ and click "Mid-term evaluation" under 22111 [[Image:Emblem-important_tiny.png‎]]
	:'''Exercise:''' [[Exercise:Malaria Vaccine\|Malaria vaccine]]		:'''Exercise:''' [[Exercise:Malaria Vaccine\|Malaria vaccine]]

Henni: /* Tuesday Oct 6 — Sequence information & logo-plots */

2026-08-17T11:02:06Z

Tuesday Oct 6 — Sequence information & logo-plots

← Older revision		Revision as of 13:02, 17 August 2026
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	:'''Slides:''' on DTU Learn.		:'''Slides:''' on DTU Learn.
	:'''Handout''' for the lecture: [https://teaching.healthtech.dtu.dk/material/22111/Logo_exercise.pdf How to construct sequence logos] (PDF)		:'''Handout''' for the lecture: [https://teaching.healthtech.dtu.dk/material/22111/Logo_exercise.pdf How to construct sequence logos] (PDF)
	~~:[[Image:Emblem-important_tiny.png‎]] '''Mid-term evaluation:''' Go to https://evaluering.dtu.dk/ and click "Mid-term evaluation" under 22111 [[Image:Emblem-important_tiny.png‎]]~~
	:'''Exercise:''' [[ExSeqLogos\|DNA and Peptide Logos]]		:'''Exercise:''' [[ExSeqLogos\|DNA and Peptide Logos]]